Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0402
(597 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22060.1 68418.m02569 DNAJ heat shock protein, putative stron... 32 0.25
At3g44110.2 68416.m04728 DNAJ heat shock protein, putative (J3) ... 32 0.33
At3g44110.1 68416.m04727 DNAJ heat shock protein, putative (J3) ... 32 0.33
At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putat... 31 0.58
At2g35270.1 68415.m04326 DNA-binding protein-related contains Pf... 29 2.4
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ... 29 3.1
At5g05580.1 68418.m00606 omega-3 fatty acid desaturase, chloropl... 27 9.5
At4g18770.1 68417.m02773 myb family transcription factor (MYB98)... 27 9.5
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl... 27 9.5
At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ b... 27 9.5
At2g25200.1 68415.m03014 expressed protein 27 9.5
At1g24150.1 68414.m03047 formin homology 2 domain-containing pro... 27 9.5
>At5g22060.1 68418.m02569 DNAJ heat shock protein, putative strong
similarity to SP|O60884 DnaJ homolog subfamily A member
2 (Dnj3) Homo sapiens, several plant DnaJ proteins from
PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684
DnaJ central domain (4 repeats), PF01556 DnaJ C terminal
region
Length = 419
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 285 GHRDRLPLLFRSIISGCNGSGSESAGSLRSGSGQGPVLRSIDKAVKRGFAHRVE 446
G +L L +++ S CNG GS+S S++ G QG ++ + G +V+
Sbjct: 136 GTTKKLSLSRKALCSKCNGKGSKSGASMKCGGCQGSGMKISIRQFGPGMMQQVQ 189
>At3g44110.2 68416.m04728 DNAJ heat shock protein, putative (J3)
identical to AtJ3 [Arabidopsis thaliana] GI:2641638,
strong similarity to several plant DnaJ proteins from
PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684
DnaJ central domain (4 repeats), PF01556 DnaJ C terminal
region
Length = 343
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 285 GHRDRLPLLFRSIISGCNGSGSESAGSLRSGSGQG 389
G +L L ++ S CNG GS+S SL+ G QG
Sbjct: 135 GTMKKLSLSRNALCSKCNGKGSKSGASLKCGGCQG 169
>At3g44110.1 68416.m04727 DNAJ heat shock protein, putative (J3)
identical to AtJ3 [Arabidopsis thaliana] GI:2641638,
strong similarity to several plant DnaJ proteins from
PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684
DnaJ central domain (4 repeats), PF01556 DnaJ C terminal
region
Length = 420
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 285 GHRDRLPLLFRSIISGCNGSGSESAGSLRSGSGQG 389
G +L L ++ S CNG GS+S SL+ G QG
Sbjct: 135 GTMKKLSLSRNALCSKCNGKGSKSGASLKCGGCQG 169
>At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putative
similar to SWISS-PROT:Q41364 2-oxoglutarate/malate
translocator, chloroplast precursor. [Spinach]{Spinacia
oleracea}
Length = 563
Score = 31.1 bits (67), Expect = 0.58
Identities = 25/68 (36%), Positives = 33/68 (48%)
Frame = +3
Query: 270 NRHHHGHRDRLPLLFRSIISGCNGSGSESAGSLRSGSGQGPVLRSIDKAVKRGFAHRVER 449
+ HHH H RL LL R+ + S SLRS S Q P+ + K + R F+ R+
Sbjct: 19 SHHHHHHPSRLSLLRRT-----SSRSPPSTISLRSLSVQ-PLSFPLLKPIPR-FSTRIAA 71
Query: 450 RDVDNPPP 473
DN PP
Sbjct: 72 APQDNAPP 79
>At2g35270.1 68415.m04326 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 285
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 264 HSNRHHHGHRDRLPLLFRSIISGCNGSGSESAGSL 368
H + H+H H L L+ + SG G G +G L
Sbjct: 41 HHHHHNHNHHQGLDLIASNDNSGLGGGGGGGSGDL 75
>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 152 MGCVCCSLSSFVSIILDALERVSLWTVCAM 241
+ C+CC L+ F + + ++S+ VCAM
Sbjct: 196 VNCICCDLALFSMLYHSSTYKLSMHPVCAM 225
>At5g05580.1 68418.m00606 omega-3 fatty acid desaturase,
chloroplast, temperature-sensitive (FAD8) identical to
SP:48622 Temperature-sensitive omega-3 fatty acid
desaturase, chloroplast precursor (EC 1.14.19.-)
{Arabidopsis thaliana}; contains Pfam profile PF00487:
Fatty acid desaturase; identical to cDNA plastid fatty
acid desaturase GI:1030694
Length = 435
Score = 27.1 bits (57), Expect = 9.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3
Query: 276 HHHGHRDRLP 305
HHHGH D+LP
Sbjct: 316 HHHGHEDKLP 325
>At4g18770.1 68417.m02773 myb family transcription factor (MYB98)
identical to transcription factor (MYB98) GI:15375282
from [Arabidopsis thaliana]
Length = 427
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Frame = +3
Query: 246 HVVDADHS--NRHHHGHRDRLPLLFRSIISGC 335
H +D DH + HHHG PLL S C
Sbjct: 48 HHLDHDHQFDHHHHHGSSSSHPLLSVQTTSSC 79
>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
(FAD7) (FADD) identical to omega-3 fatty acid
desaturase, chloroplast precursor SP:P46310 [Arabidopsis
thaliana (Mouse-ear cress)]; identical to Pfam profile
PF00487: Fatty acid desaturase; identical to cDNA
plastid fatty acid desaturase GI:809491
Length = 446
Score = 27.1 bits (57), Expect = 9.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3
Query: 276 HHHGHRDRLP 305
HHHGH D+LP
Sbjct: 323 HHHGHEDKLP 332
>At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ
boundaries domain protein 18 (LBD18) identical to LOB
DOMAIN 18 [Arabidopsis thaliana] GI:17227164; supported
by full-length cDNA gi:17227163
Length = 262
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 330 GCNGSGSESAGSLRSGSGQGP 392
GC G GS G G G GP
Sbjct: 17 GCGGGGSSGGGGSSGGGGGGP 37
>At2g25200.1 68415.m03014 expressed protein
Length = 354
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 483 CYSSGVDCQHHGVPRDVRIHV*PL 412
CY +DC H +P R+ + PL
Sbjct: 86 CYLHSLDCYRHSIPFAFRLEIKPL 109
>At1g24150.1 68414.m03047 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 725
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 234 HTVHNDTLSRASRIMDTKE 178
H H DTL R SRI TKE
Sbjct: 409 HDFHPDTLERLSRIAPTKE 427
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,403,244
Number of Sequences: 28952
Number of extensions: 283227
Number of successful extensions: 883
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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