Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0400
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   1.8  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   2.4  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    26   4.1  
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    25   9.5  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   9.5  

>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 241 PSATITGLGT-MMAGSAMITGETAGFSSTFDCSGSTLSTGVALAAS 107
           P++ IT   T +   S+ ++  T  +S+    +GST +TG A  +S
Sbjct: 246 PTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSS 291


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 3   ARALVEAPIVPSPVHVGPLVPGQLTPLVHILINI 104
           A  L + PIV S  H+ P   G+L P +H  +++
Sbjct: 782 AALLSKFPIVNSTHHLLPSPQGELAPAIHATLDV 815


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 280 NGGVSHDHRATLGPSATITGLGTMMAGSAMI 188
           +GG S    A LG  A+  G+GT + GS  I
Sbjct: 206 SGGSSGGEGALLGSGASCCGIGTDIGGSIRI 236


>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 250 TLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLS 131
           T G       L T+     M +GE   +SS+F+C    L+
Sbjct: 243 TTGSGVASYPLDTIRRRMMMTSGEAVKYSSSFECGRQILA 282


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 317 GTRHQRALG*GPQWRGQPRSQGYTRSLGNNYR 222
           G R +R  G G   RG  R +GY R+  N YR
Sbjct: 382 GNRGRRGRGRGRGGRG--RGRGYARNQYNQYR 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,329,306
Number of Sequences: 5004
Number of extensions: 21177
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)