Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0400
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 33 0.11
11_04_0184 - 14645630-14645905,14645997-14646701 31 0.79
10_06_0095 + 10609102-10609593 30 1.0
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 29 1.8
08_02_0929 + 22694917-22695072,22695399-22695781,22698637-226987... 29 3.2
02_01_0566 - 4144104-4144230,4144492-4144649,4145770-4146885 29 3.2
08_02_0767 + 21004373-21004545,21004656-21004711,21004800-210048... 28 4.2
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 28 5.5
08_01_0007 - 57681-57728,58260-58336,58418-58464,58808-58908,590... 28 5.5
05_03_0150 - 8953545-8954024 28 5.5
02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162 28 5.5
10_08_0666 - 19691985-19692216,19692327-19692404,19692508-196928... 27 9.7
10_08_0499 + 18354014-18354106,18354219-18354424,18356499-18356751 27 9.7
06_01_0386 - 2767806-2767955,2768150-2768239,2768317-2768373,276... 27 9.7
05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361 27 9.7
05_01_0214 - 1615519-1616775 27 9.7
05_01_0141 - 937428-937717,938483-938705 27 9.7
03_02_0967 + 12786219-12786305,12786716-12786781,12786897-127869... 27 9.7
01_01_0481 + 3531859-3532145,3532254-3532749 27 9.7
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 33.5 bits (73), Expect = 0.11
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = -2
Query: 256 RATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRG 77
+ T+ A LGT+ + AM TG TAGF +F+ S S L S +I+ WTR
Sbjct: 31 QVTVRAVAVSVVLGTLFSFMAMRTGLTAGFVPSFNMSASLL--------SFFIIKSWTRL 82
Query: 76 VSCPGTRGPTWT 41
++ G +T
Sbjct: 83 MARCGVASQPFT 94
>11_04_0184 - 14645630-14645905,14645997-14646701
Length = 326
Score = 30.7 bits (66), Expect = 0.79
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = -2
Query: 358 GHNGRVSHDHGGHQGHVTNVHWARG---HN-GGVSHDHRATLGPSATITGLGTMMAGSAM 191
G G +HD G+ G + A G H+ GG+ H A G + T G AG+ +
Sbjct: 69 GATGTGTHDAAGYGGSGQPAYGATGTGVHDAGGLMPGHTAGHGTTGTGVHHG---AGAGL 125
Query: 190 ITGETAGFSST 158
G+TAG+ +T
Sbjct: 126 PAGQTAGYGTT 136
>10_06_0095 + 10609102-10609593
Length = 163
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Frame = -2
Query: 307 TNVHWARGHNGGVSHDHRATLGPSATITGL---GTMMAGSAMI-TGETAGFSSTFDCSGS 140
T+ W G N VS RA GP+ TIT L G M A G F T DC S
Sbjct: 35 TDGRWYAGTNARVSLQVRAASGPTLTITNLESWGQMAASHDYFEKGNLDRFRGTGDCMPS 94
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 332 PRGTPGTRHQRALG*GPQWRGQPRSQGYTRSLGNNYRARYYDGR 201
P +P R R+ P+ RG+ RS+ +RS G + RY DG+
Sbjct: 55 PTPSPTRRSSRSRSRSPR-RGRSRSRSRSRSRGRSASPRYPDGK 97
>08_02_0929 +
22694917-22695072,22695399-22695781,22698637-22698769,
22698870-22699312,22699786-22699864
Length = 397
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 320 PGTRHQRALG*GPQWRGQPRSQGYTRSLGNNYRARYY 210
P T H+ G GQP S G+ +LGN +R +++
Sbjct: 242 PHTLHRSLTGGRTTGYGQPDSLGHQHNLGNGHRQQHH 278
>02_01_0566 - 4144104-4144230,4144492-4144649,4145770-4146885
Length = 466
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 334 DHGGHQGHVTNVHWARGHNGGVSHDHRATLGP 239
+HG GH T + + G+ GG H+ A P
Sbjct: 284 EHGDGYGHSTEMAYGGGYAGGYEHNAAAATAP 315
>08_02_0767 +
21004373-21004545,21004656-21004711,21004800-21004882,
21004942-21005112,21005806-21005997
Length = 224
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -2
Query: 274 GVSHDHRATLGPSATITGL-GTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLML 98
GV D R P + GL G +AG +M + + A +S D GV + L++
Sbjct: 2 GVREDSR----PLGGLDGLYGVQLAGRSMYSDDEAVKTSIIDPLAREPQEGVGTSRRLLI 57
Query: 97 IRMWTRGVSC 68
R+W + C
Sbjct: 58 RRLWQQRPPC 67
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 361 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHD 260
R H+ R SH H H+ H T + R H+ HD
Sbjct: 694 RAHSHRHSHHHDAHKRHKTELAGHRRHHVLHIHD 727
>08_01_0007 -
57681-57728,58260-58336,58418-58464,58808-58908,
59016-59108,59418-59540,59637-59755,60154-60510,
60888-61011
Length = 362
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/69 (30%), Positives = 26/69 (37%)
Frame = -2
Query: 364 PRGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRATLGPSATITGLGTMMAGSAMIT 185
P HN +H+H H H N HN H T P+ T G A ++ T
Sbjct: 48 PHNHNHNHNHNHNIHNSHNHN----HNHNAAPHPCHTPT--PTPTPRGFADWSASTSAFT 101
Query: 184 GETAGFSST 158
A SST
Sbjct: 102 -SLAAHSST 109
>05_03_0150 - 8953545-8954024
Length = 159
Score = 27.9 bits (59), Expect = 5.5
Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 1/111 (0%)
Frame = -2
Query: 343 VSHDHGGHQGHVTNVHWARGHNGGVSHDHRATLGPSATITGLGTMMAGSAMITGETAGFS 164
+ H G G G V +H + + G+G S GE
Sbjct: 23 ICHGSGSGDGLQEEPPHVEGSTVTVLAEHGDDIAVRRPVAGIGAGEEASVAAPGEHGAPL 82
Query: 163 STFDCSGSTLSTGVALAASLMLIRMW-TRGVSCPGTRGPTWTGDGTMGAST 14
FD + G +A L + W T S G G G+ +ST
Sbjct: 83 GAFDVREAEQLAGERVADGLHVFWFWVTEVASASGAGGGDMLGEAAFPSST 133
>02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162
Length = 213
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 367 WPRGHNGRVSHDH-GGHQGHVTNVHWARGHNGGVSHDHRATLGPSAT 230
W RG GR H GG G + H+A GH H H A PS++
Sbjct: 82 WRRG-GGRGEERHTGGGGGGSHHAHYAHGH----GHAHAAAPSPSSS 123
>10_08_0666 -
19691985-19692216,19692327-19692404,19692508-19692837,
19692913-19693158,19693224-19693483,19694469-19695023
Length = 566
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 133 STGVALAASLMLIRMWTRGVSCPGTRGPTWTGDGTMGASTRARA 2
S+G A AA+ + + P +RG W G+ GA A A
Sbjct: 95 SSGPAPAAAGTTVSRYRAPFPWPASRGVVWAGNSARGAKAAADA 138
>10_08_0499 + 18354014-18354106,18354219-18354424,18356499-18356751
Length = 183
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -2
Query: 226 TGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLML 98
TGLG +I A SS C G+ L G A A +L+L
Sbjct: 53 TGLGAAALALLLIGQAVAAVSSRCFCCGAALRPGGARACALIL 95
>06_01_0386 -
2767806-2767955,2768150-2768239,2768317-2768373,
2768477-2768533,2768610-2769389
Length = 377
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/56 (28%), Positives = 20/56 (35%)
Frame = -1
Query: 359 GPQWQGQPRPRGTPGTRHQRALG*GPQWRGQPRSQGYTRSLGNNYRARYYDGRISN 192
GP+W P P +P T H P R + Q SL R + SN
Sbjct: 73 GPEWPLAPSPPASPTTWHDNKAASSPAQRPPQQKQPSPGSLSQRAALRAAEEFFSN 128
>05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361
Length = 760
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 172 GFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCPGTRGPTWTGDG 32
G+ T+ G++ S G A +SL L R W+ S P W +G
Sbjct: 634 GWGGTWGSGGTSSSLGAA--SSLGLFRGWSSSESSSSLSRPDWRTNG 678
>05_01_0214 - 1615519-1616775
Length = 418
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -2
Query: 343 VSHDHGGHQGHVTNVHWARGH-NGGVSHDH 257
+ HDHG GH + H +GG HDH
Sbjct: 180 LGHDHGHGHGHGHGHGHSHDHDHGGSDHDH 209
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 358 GHNGRVSHDHGGHQGHVTNVHWARGHNGG 272
GH+G + H GH G + H GH+GG
Sbjct: 114 GHHGGLFGGHHGHHGGLFGGH--HGHHGG 140
>03_02_0967 +
12786219-12786305,12786716-12786781,12786897-12786971,
12787054-12787162,12787253-12787299,12787396-12787453,
12788193-12788242,12788459-12788504,12788758-12788808,
12789376-12789478,12789923-12789956,12790210-12790224
Length = 246
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 349 GRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRATLG 242
GR ++ GH+ V H RG NGG S D + G
Sbjct: 64 GRDGYNFDGHRLRVEPAHGGRG-NGGSSFDRPSNFG 98
>01_01_0481 + 3531859-3532145,3532254-3532749
Length = 260
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -2
Query: 268 SHDHRATLGPSATITGLGTMMAGSAM-ITGETAGFSSTFDCSG 143
SHD R T P+A I + A +AM TG G D SG
Sbjct: 164 SHDDRTTPAPAAHIAAAAAVEAPAAMTTTGGAVGGGVLVDNSG 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,212,578
Number of Sequences: 37544
Number of extensions: 187848
Number of successful extensions: 695
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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