Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0400
(542 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033) 32 0.26
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.26
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5) 31 0.61
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3) 31 0.80
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 30 1.4
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12) 29 1.9
SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51) 29 2.5
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 29 3.2
SB_5829| Best HMM Match : S4 (HMM E-Value=4.2) 29 3.2
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2) 29 3.2
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 28 4.3
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 28 4.3
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9) 28 4.3
SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5) 25 4.9
SB_42336| Best HMM Match : Sushi (HMM E-Value=1.5e-08) 28 5.7
SB_39689| Best HMM Match : S-antigen (HMM E-Value=0.021) 28 5.7
SB_55724| Best HMM Match : SURF6 (HMM E-Value=0.62) 27 7.5
SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20) 27 7.5
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65) 27 7.5
SB_93| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79) 27 9.9
SB_59546| Best HMM Match : Collagen (HMM E-Value=0.003) 27 9.9
SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
Length = 382
Score = 32.3 bits (70), Expect = 0.26
Identities = 23/73 (31%), Positives = 35/73 (47%)
Frame = -2
Query: 346 RVSHDHGGHQGHVTNVHWARGHNGGVSHDHRATLGPSATITGLGTMMAGSAMITGETAGF 167
R SHDH H H+ R HN H + T +ATI T++A +A+ T T
Sbjct: 121 RHSHDHDRH-------HYHRHHNNIHHHHYATTKTTAATIKTKTTIIAITAITTTTTTTT 173
Query: 166 SSTFDCSGSTLST 128
++T + +T +T
Sbjct: 174 TTTTTTTTTTTTT 186
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = -1
Query: 278 WRGQPRSQGYTRSLGNNYRARYYDGRISND 189
+RG+ RS+GY RS G NY RY D S D
Sbjct: 243 YRGRDRSRGYERSRGQNYN-RYRDDDRSRD 271
>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1422
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 278 WRGQPRSQGYTRSLGNNYRARYYDGRISNDHGR 180
WR + + G + NY+ARY + RISN+ R
Sbjct: 205 WRKRSGTDGVSEITAENYQARYPESRISNESER 237
>SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)
Length = 442
Score = 31.1 bits (67), Expect = 0.61
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +3
Query: 18 EAPIVPSPVHVGPLVPGQLTPLVHILININDAASATPVESVEPEQSNVEEK 170
+ PI P P + + G L +++++ND +A PVE+V+ +Q++ + K
Sbjct: 348 KGPISPDPA-IMEEIDGLSNTLDDLILSLNDVDTAEPVENVDIDQADADCK 397
>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
Length = 861
Score = 30.7 bits (66), Expect = 0.80
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
Frame = -2
Query: 361 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRATLGPSATITGLGTMMAG-SAMIT 185
RG G G +G G + G + R T G S ITG G S IT
Sbjct: 210 RGTTGASRGTTGASRGTTGASRGTTGASRGTTGASRGTTGASRGITGASRGTTGASRCIT 269
Query: 184 GETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCPGTRGPTWTGDGTMGAS 17
G + G + G+T ++ AS RG + +RG T T GT GAS
Sbjct: 270 GASRGITGA--SRGTTGASRGTTGAS--------RGTT-GASRGTTGTSRGTTGAS 314
>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = -2
Query: 337 HDHGGHQGHVTNVHWARGHNGGVSHDHRATLGPSATITGLGTMMAGSAMITGETAGFSST 158
HDH H H+ R HN H + T +ATI T++A +A+ T T ++T
Sbjct: 2 HDHDRH-------HYHRHHNNIHHHHYATTKTTAATIKTKTTIIAITAITTTTTTTTTTT 54
Query: 157 FDCSGSTLST 128
+ +T +T
Sbjct: 55 TTTTTTTTTT 64
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 72 LTPLVHILININDAASATPVESVEPEQSNVEE 167
LT H+LIN+ND PV S QS V+E
Sbjct: 597 LTDTSHLLINVNDINDNPPVFSPSAYQSRVKE 628
>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
Length = 1290
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Frame = -2
Query: 325 GHQGHVTNVHWAR--------GHNGGVSHDHRATLGPSATITG 221
GH+G V +HWA+ GH G V HRA S+ TG
Sbjct: 806 GHKGQVHPIHWAQRASSFHPPGHKGQVHPIHRAQRASSSHPTG 848
Score = 27.1 bits (57), Expect = 9.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 325 GHQGHVTNVHWARGH 281
GH+G V +HW +GH
Sbjct: 1128 GHKGQVHPIHWHKGH 1142
>SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 194 NDHGRNSRLFFNI*LFRFDAFNGGSAGSIVDVNKNVDER 78
N+ G L+ I LFR N GS DV K+ DER
Sbjct: 23 NERGNQFSLYQKIDLFRLQCLNEAEEGSGKDVFKSWDER 61
>SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -2
Query: 355 HNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRA-TLGPSATIT 224
HN +++ H H N H N S+DH A T P+A T
Sbjct: 185 HNNNNNNNSNNHNNHKNNNHNNNNSNNNNSNDHTATTTTPTAKTT 229
>SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -1
Query: 356 PQWQGQPRPRGTPGTRHQRALG*GPQWRGQPRSQGYTRSLGNNYRARYYDGRISND 189
P+ + PR R P TR+ P+ R PRS+ R+ N+ R R D R ND
Sbjct: 196 PRTRNDPRTRNDPRTRNDPWTQNDPRTRNDPRSRNDPRT-RNDPRTR-NDPRARND 249
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -1
Query: 356 PQWQGQPRPRGTPGTRHQRALG*GPQWRGQPRSQGYTRSLGNNYRARYYDGRISND 189
P+ + PR R P TR+ P + PR++ RS N+ R R D R ND
Sbjct: 190 PRTRNDPRTRNDPRTRNDPRTRNDPWTQNDPRTRNDPRS-RNDPRTR-NDPRTRND 243
>SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51)
Length = 567
Score = 29.1 bits (62), Expect = 2.5
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Frame = -2
Query: 253 ATLGPSATITGLGTMMAGSAMITGETAGFSST---FDCSGSTL-STGVALAASLMLIRMW 86
AT G TGLGT G+ AGF +T F +G+ +TG +
Sbjct: 76 ATTGFGTATTGLGTSAFGTTGTGFGAAGFGNTGTGFGTTGTGFGTTGTGFGTTGTGFGTI 135
Query: 85 TRGVSCPGTRGPTWTGDGTMGAST 14
G++ G G T TG GT G T
Sbjct: 136 GTGLATAGF-GTTGTGFGTTGFGT 158
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -1
Query: 356 PQWQGQPRPRGTPGTRHQRALG*GPQWRGQPRSQGYTRSLG--NNYRARYYDGRISND 189
P QG P PRG+ G ++ RGQP + G ++G N +R GR+ D
Sbjct: 361 PGAQGMPGPRGSTGEAGRQGPPGANGDRGQPGAPGAEGAMGEKGNQGSRGPTGRVGPD 418
>SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)
Length = 893
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -1
Query: 356 PQWQGQPRPRGTPGTRHQRALG*GPQWRGQPRSQGYTRSLGNNYRARYYDGRISND 189
P+ + PR R P TR+ P+ R PR++ R+ N+ R R D R ND
Sbjct: 808 PRTRNDPRTRNDPRTRNDPRTRNDPRTRNDPRTRNDPRT-RNDPRTR-NDPRTRND 861
>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
Length = 939
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -1
Query: 356 PQWQGQPRPRGTPGTRHQRALG*GPQWRGQPRSQGYTRSLGNNYRARYYDGRISND 189
P+ + PR R P TR+ P+ R PR++ R+ N+ R R D R ND
Sbjct: 756 PRTRNDPRTRNDPWTRNDPRTRNDPRTRNDPRTRNDPRT-RNDPRTR-NDPRTRND 809
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1
Query: 347 QGQPRPRGTPGTRHQRALG--*GPQWR-GQPRSQGYTRSLGN 231
+GQP P G+PG +R G GP+ + G P + G+ S G+
Sbjct: 32 RGQPGPEGSPGLPGERGTGGVPGPKGKQGAPGTIGFPGSRGD 73
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 361 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDH 257
R H+ R H HGG G+ + GH GG H H
Sbjct: 123 RSHSHR--HAHGGGPGYGGDYGGGLGHCGGPGHGH 155
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1
Query: 347 QGQPRPRGTPGTRHQRALG--*GPQWR-GQPRSQGYTRSLGN 231
+GQP P G+PG +R G GP+ + G P + G+ S G+
Sbjct: 32 RGQPGPEGSPGLPGERGTGGVPGPKGKQGAPGTIGFPGSRGD 73
>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
Length = 125
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 358 GHNGRVSHD-HGGHQGHVTNVHWARGHNGGVSHDHRAT 248
G++G HD H H + + H+ GH+ G+ HD+ T
Sbjct: 69 GYHGYHDHDVHIHHHDYGGHDHYDGGHHDGMHHDYGHT 106
>SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5)
Length = 738
Score = 25.4 bits (53), Expect(2) = 4.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 316 GHVTNVHWARGHNGGVS 266
GHVTN +RGH+G ++
Sbjct: 720 GHVTNTSRSRGHDGYIT 736
Score = 21.0 bits (42), Expect(2) = 4.9
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Frame = -2
Query: 367 WPRGHNGRVSHDHGG-HQGHVT 305
W R H R S+ HG + HVT
Sbjct: 671 WIREHKERTSYGHGTVTRRHVT 692
>SB_42336| Best HMM Match : Sushi (HMM E-Value=1.5e-08)
Length = 303
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Frame = -2
Query: 235 ATITGLGTMMAGSAMITGETAGFSSTFDCS-GSTLSTGVALAASLMLIRMWTRG-VSCPG 62
+T+TG AG G AG F C G L A + + +W+ SC
Sbjct: 97 STVTGTTVSPAGCTQTGGAYAGIHCVFSCQPGYKLPENTANSVTCQSTGLWSGSPTSCQK 156
Query: 61 TRGPTWT 41
R P T
Sbjct: 157 KRCPALT 163
>SB_39689| Best HMM Match : S-antigen (HMM E-Value=0.021)
Length = 465
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 359 GPQWQGQ--PRPRGTPGTRHQRALG*GPQWRGQPRSQG 252
GP+ QG PR +GT G R Q G Q PR QG
Sbjct: 264 GPRDQGTKGPRDQGTKGPRDQGTKGPRDQGTKGPRDQG 301
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 359 GPQWQGQ--PRPRGTPGTRHQRALG*GPQWRGQPRSQG 252
GP+ QG PR +GT G R Q G Q PR QG
Sbjct: 272 GPRDQGTKGPRDQGTKGPRDQGTKGPRDQGTKGPRDQG 309
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 359 GPQWQGQ--PRPRGTPGTRHQRALG*GPQWRGQPRSQG 252
GP+ QG PR +GT G R Q G Q PR QG
Sbjct: 280 GPRDQGTKGPRDQGTKGPRDQGTKGPRDQGTKGPRDQG 317
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 359 GPQWQGQ--PRPRGTPGTRHQRALG*GPQWRGQPRSQG 252
GP+ QG PR +GT G R Q G Q PR QG
Sbjct: 288 GPRDQGTKGPRDQGTKGPRDQGTKGPRDQGTKGPRDQG 325
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 359 GPQWQGQ--PRPRGTPGTRHQRALG*GPQWRGQPRSQG 252
GP+ QG PR +GT G R Q G Q PR QG
Sbjct: 296 GPRDQGTKGPRDQGTKGPRDQGTKGPRDQGTKGPRDQG 333
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 359 GPQWQGQ--PRPRGTPGTRHQRALG*GPQWRGQPRSQG 252
GP+ QG PR +GT G R Q G Q PR QG
Sbjct: 304 GPRDQGTKGPRDQGTKGPRDQGTKGPRDQGTKGPRDQG 341
>SB_55724| Best HMM Match : SURF6 (HMM E-Value=0.62)
Length = 1105
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 287 GPQWRGQPRSQGYTRSLGNNYRARYYDGRISNDHGR 180
G +R +P YT G NYRA++ + + GR
Sbjct: 478 GRNYRAKPTRLSYTTEKGRNYRAKHTKLSNTTEKGR 513
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 287 GPQWRGQPRSQGYTRSLGNNYRARYYDGRISN--DHGRNSR 171
G +R +P Y G NYRA+ R+SN + GRN R
Sbjct: 546 GRNYRAKPTRLSYNTEKGRNYRAK--PTRLSNTTEKGRNYR 584
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 314 TRHQRALG*GPQWRGQPRSQGYTRSLGNNYRARYYDGRISNDHGRNSR 171
TR + G +R +P T G NYRA+ + + GRN R
Sbjct: 520 TRLSNTMEKGRNYRAKPTRLSNTTEKGRNYRAKPTRLSYNTEKGRNYR 567
>SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20)
Length = 525
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = -2
Query: 223 GLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCPGTRGPTW 44
G G ++ ITG S ++C+GS S G A+A + + + + GV+ G G +
Sbjct: 413 GSGAVIGKKLTITGALKENSGLYECTGSN-SWGNAIAVASLTVEISGSGVAV-GDEGQSL 470
Query: 43 T 41
T
Sbjct: 471 T 471
>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1483
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 361 RGHNGRVSHDHGGHQGHVTNVHWA 290
+G N + + GH HVTNV WA
Sbjct: 875 KGKNAKFKK-YPGHSAHVTNVRWA 897
>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 82 RGVSCPGTRGPTWTGDGTMGA 20
R +CP TRG T +G G GA
Sbjct: 449 RSSACPPTRGSTSSGSGAFGA 469
>SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)
Length = 1007
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +3
Query: 60 VPGQLTPLVHILININDAASATPVESVEPEQSNVEEK 170
+ G L +++++ND +A PVE+V+ +Q++ + K
Sbjct: 4 IDGLSNTLDDLILSLNDVDTAEPVENVDIDQADADCK 40
>SB_93| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 27.5 bits (58), Expect = 7.5
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 259 HRATLGPSATITGLGTMMAG-SAMITGETAGFSSTFDCSGSTLSTGVALAA 110
H ATL T L + A SA+ E A F CS +T TGV LAA
Sbjct: 252 HFATLSNENMTTELSVIRANVSAIGPTEFAIGLQVFFCSPATFGTGVILAA 302
>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
Length = 308
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 292 ARGHNGGVSHDHRATLGPSATITGLGTMMAGSAMITGETAG 170
A G G + ++T+ + T+TGLG + S +++G T G
Sbjct: 182 ALGFGGLGTLGAKSTVATTTTVTGLGGTGSSSTLLSGATNG 222
>SB_59546| Best HMM Match : Collagen (HMM E-Value=0.003)
Length = 157
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 356 PQWQGQPRPRGTPGTRHQRALG*GPQWRGQP 264
P +QG P PRG G A GPQW P
Sbjct: 9 PGYQGVPGPRGMQG-EEGPAGNKGPQWVNNP 38
>SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = -2
Query: 358 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRATLGPSAT 230
GH ++H H H A H G++H H L S T
Sbjct: 216 GHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSYT 258
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,052,199
Number of Sequences: 59808
Number of extensions: 201001
Number of successful extensions: 737
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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