Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0400
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    27   0.093
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.29 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.29 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   6.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.1  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 27.5 bits (58), Expect = 0.093
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 275 RGQPRSQGYTRSLGNNYRARYYDGRISNDHGRNSRLFFNI 156
           R + R      SL NNY    Y+   +N +  N +L++NI
Sbjct: 73  RERSREPKIISSLSNNYNYSNYNNYNNNYNNYNKKLYYNI 112


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 301  VHWARGHNGGVS 266
            +HW  GHNGG S
Sbjct: 1422 LHWKSGHNGGAS 1433


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 301  VHWARGHNGGVS 266
            +HW  GHNGG S
Sbjct: 1418 LHWKSGHNGGAS 1429


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 30  VPSPVHVGPLVPGQLTPLVHI 92
           VP P+H G   P  + P + I
Sbjct: 346 VPVPIHCGNFPPRPMGPWISI 366


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 131 NGGSAGSIVDVNKNVDERGKLSRN 60
           N     S++D N  VD   +++RN
Sbjct: 296 NSQGPSSVIDTNTGVDYFTQINRN 319


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/36 (27%), Positives = 13/36 (36%)
 Frame = -2

Query: 364 PRGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDH 257
           P  H+    H H G   H  + +   G   G  H H
Sbjct: 318 PHQHHPSQYHPHRGSSPHHQHGNHTMGPTMGPPHHH 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,299
Number of Sequences: 438
Number of extensions: 1886
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)