Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0400
         (542 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56150.1 68416.m06241 eukaryotic translation initiation facto...    31   0.38 
At2g05440.2 68415.m00575 glycine-rich protein                          31   0.66 
At2g05440.1 68415.m00574 glycine-rich protein                          31   0.66 
At2g05510.1 68415.m00583 glycine-rich protein                          30   1.1  
At3g28840.1 68416.m03598 expressed protein                             29   1.5  

>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
           subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
           identical to SP|O49160 Eukaryotic translation initiation
           factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
           {Arabidopsis thaliana}
          Length = 900

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -1

Query: 344 GQPRPRGTPGTRHQRALG*GPQWRGQPRSQGYTRSLGNNYRARYYDG 204
           GQ R     G    R+ G   QW GQ R  GY   +G+  R    DG
Sbjct: 841 GQGRQGNRSGYGGGRSSGQNGQWSGQNRGGGYAGRVGSGNRGMQMDG 887


>At2g05440.2 68415.m00575 glycine-rich protein
          Length = 154

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 358 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 263
           GH G   H HGGH G     H   G+ GG  H
Sbjct: 52  GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81



 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -2

Query: 358 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 263
           GH G   H  GG  GH        GHNGG  H
Sbjct: 46  GHGGHGGHGGGGGHGH-------GGHNGGGGH 70


>At2g05440.1 68415.m00574 glycine-rich protein
          Length = 127

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 358 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 263
           GH G   H HGGH G     H   G+ GG  H
Sbjct: 52  GHGGGGGHGHGGHNG--GGGHGLDGYGGGGGH 81



 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = -2

Query: 358 GHNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 263
           GH G   H  GG  GH        GHNGG  H
Sbjct: 46  GHGGHGGHGGGGGHGH-------GGHNGGGGH 70


>At2g05510.1 68415.m00583 glycine-rich protein 
          Length = 127

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -2

Query: 364 PRG-HNGRVSHDHGGHQGHVTNVHWARGHNGGVSH 263
           P G H G   H  GGH G     H   GHNGG  H
Sbjct: 40  PEGYHGGHGGHGGGGHYG--GGGHGHGGHNGGGGH 72



 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 358 GHNGRVSHDHGGHQGHVTNVHWARGHNGG 272
           GH G   H HGGH G     H   G+ GG
Sbjct: 54  GHYGGGGHGHGGHNG--GGGHGLDGYGGG 80


>At3g28840.1 68416.m03598 expressed protein 
          Length = 391

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 25/85 (29%), Positives = 31/85 (36%)
 Frame = -2

Query: 262 DHRATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWT 83
           D  A+ G SAT TG     AG +  +G       T    G+T + G   A         T
Sbjct: 196 DSTASGGVSATGTGSYGAGAGGSSASGSDTAAGGTTATGGTTAAGGSTAAGGTTASGAGT 255

Query: 82  RGVSCPGTRGPTWTGDGTMGASTRA 8
            G       G T +G GT    T A
Sbjct: 256 AGYGAT-AGGATASGAGTAAGGTTA 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,463,391
Number of Sequences: 28952
Number of extensions: 126709
Number of successful extensions: 458
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)