Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0399
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    26   4.6  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    26   6.0  

>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 374 SRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN 475
           SRP    ++P+ +AS   N   + PE K   PS+
Sbjct: 73  SRPKTSTSTPKSAASPAPNPPASVPEKKVEAPSS 106


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = +2

Query: 371 PSRPSPEHNS----PQHSASTTSNEVKTTPESKSV 463
           PS+P+P + S    PQ S ++ ++   TTP+S SV
Sbjct: 450 PSKPAPVNASRPMMPQQSNNSEASIPSTTPQSPSV 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,522
Number of Sequences: 5004
Number of extensions: 36537
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)