Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0399
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)                    29   3.7  
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -2

Query: 606  INVAKMINIKNITCFKPLKH-SPVKLLSFEIVQFN-ARRRYVLD-Y*LEGSTDFDSGVVL 436
            I  + + N+ N+TC   L+H SPV  ++   VQ N     +V+D   L   TD++  +V+
Sbjct: 1133 IFASSICNVANVTCVWSLRHGSPVHHVTRRAVQENLVSGEFVVDKNSLNPDTDYNIVLVV 1192

Query: 435  TSLEVVDAECWGL 397
            T  E      +G+
Sbjct: 1193 TGNETTTFAMYGI 1205


>SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)
          Length = 610

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 380 PSPEHNSPQHSASTTSNEVKTTPESKSVDPS 472
           P    ++PQH  +TT+N   T P + + +P+
Sbjct: 28  PHDSRSTPQHQRTTTANFPSTNPHNSTTNPT 58


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 371  PSRPSPEHNSPQHSASTTS-NEVKTTPESKSVDPS 472
            P +PSP  N  + S STTS   +K +P +  + PS
Sbjct: 1275 PIKPSPSTNPIKPSPSTTSTTPIKPSPSTTPIKPS 1309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,500,882
Number of Sequences: 59808
Number of extensions: 270745
Number of successful extensions: 626
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)