Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0399
         (706 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ252011-1|CAB85607.1|  505|Homo sapiens amiloride-sensitive sod...    33   0.75 
BC117319-1|AAI17320.1|  257|Homo sapiens TPRXL protein protein.        31   5.3  
AK092426-1|BAC03887.1|  258|Homo sapiens protein ( Homo sapiens ...    31   5.3  

>AJ252011-1|CAB85607.1|  505|Homo sapiens amiloride-sensitive sodium
           channel protein.
          Length = 505

 Score = 33.5 bits (73), Expect = 0.75
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +3

Query: 12  RFGLKVGAAVVTILETLELISQGEWRIYVVGVYGLQ*PLNTRWAVSSSNHLSNKNK 179
           + GL  GA+++TI+E +E +    + I +   + L+    T+W     NHL NKN+
Sbjct: 448 QLGLFCGASLITIIEIIEYLFTNFYWICIF--FLLKISEMTQWTPPPQNHLGNKNR 501


>BC117319-1|AAI17320.1|  257|Homo sapiens TPRXL protein protein.
          Length = 257

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 374 SRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN 475
           S PSP  +SP  S+S+TS+   ++P S S   S+
Sbjct: 198 SSPSPRSSSPSSSSSSTSSPSTSSPSSSSPSSSS 231


>AK092426-1|BAC03887.1|  258|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35107 fis, clone PLACE6006871, moderately
           similar to SUPPRESSOR PROTEIN SRP40. ).
          Length = 258

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 374 SRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN 475
           S PSP  +SP  S+S+TS+   ++P S S   S+
Sbjct: 199 SSPSPRSSSPSSSSSSTSSPSTSSPSSSSPSSSS 232


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,665,246
Number of Sequences: 237096
Number of extensions: 1316128
Number of successful extensions: 2166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2166
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)