Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0399
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical p...    29   3.2  
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF039715-5|AAB96730.1|  391|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical protein
            T08A11.2 protein.
          Length = 1322

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 281  VTRLRIDARQLYTCLTMHVTKYSETCYFFKVL 186
            +  L++  RQL  C T+ +   SETC  F VL
Sbjct: 1116 LNNLKVQERQLRVCTTVAIAIVSETCAPFTVL 1147


>Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical
            protein T08A11.2 protein.
          Length = 1322

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 281  VTRLRIDARQLYTCLTMHVTKYSETCYFFKVL 186
            +  L++  RQL  C T+ +   SETC  F VL
Sbjct: 1116 LNNLKVQERQLRVCTTVAIAIVSETCAPFTVL 1147


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 36  AVVTILETLELISQGEWRIYVVGVYGLQ*PLNTRW 140
           +V+  + +++LI     RI+   VYG++ P+N  W
Sbjct: 211 SVIMGMASVQLIISSVRRIHDAAVYGIKDPINVSW 245


>AF039715-5|AAB96730.1|  391|Caenorhabditis elegans Hypothetical
           protein R06A10.4 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 371 PSRPSPEHNSPQHSASTTS-NEVKTTPESKSVDP 469
           P+RP+ E+NS Q + ST S   V  +     VDP
Sbjct: 335 PTRPTSEYNSMQRTKSTRSIRSVTRSDHGHRVDP 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,166,371
Number of Sequences: 27780
Number of extensions: 205294
Number of successful extensions: 487
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)