Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0399
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        26   0.40 
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   8.6  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   8.6  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   8.6  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   8.6  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 380 PSPEHNSPQHSAS--TTSNEVKTT 445
           PSP  +SPQHS S  +TS   +TT
Sbjct: 62  PSPTGSSPQHSGSSASTSPAARTT 85


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 126 LNTRWAVSSSNHLSNKNKRN*YFKKITGFTI 218
           L+  +  S+ N+ +N N  N  +KK+  + I
Sbjct: 85  LSNNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 126 LNTRWAVSSSNHLSNKNKRN*YFKKITGFTI 218
           L+  +  S+ N+ +N N  N  +KK+  + I
Sbjct: 85  LSNNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 126 LNTRWAVSSSNHLSNKNKRN*YFKKITGFTI 218
           L+  +  S+ N+ +N N  N  +KK+  + I
Sbjct: 85  LSNNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 126 LNTRWAVSSSNHLSNKNKRN*YFKKITGFTI 218
           L+  +  S+ N+ +N N  N  +KK+  + I
Sbjct: 85  LSNNYKYSNYNNYNNNNYNNNNYKKLQYYNI 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,769
Number of Sequences: 438
Number of extensions: 2480
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)