Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0399
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17440.2 68414.m02133 transcription initiation factor IID (TF...    28   5.2  
At1g17440.1 68414.m02132 transcription initiation factor IID (TF...    28   5.2  
At5g54430.1 68418.m06779 universal stress protein (USP) family p...    28   6.9  
At3g14890.2 68416.m01883 phosphoesterase identical to phosphoest...    28   6.9  
At3g14890.1 68416.m01882 phosphoesterase identical to phosphoest...    28   6.9  
At2g39110.1 68415.m04805 protein kinase, putative similar to pro...    28   6.9  

>At1g17440.2 68414.m02133 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 371 PSRPSPEHNSPQHSASTTSNEVKTTPESKSVD 466
           P  PSP  ++P  S+S+   ++ T P S SV+
Sbjct: 20  PMEPSPASSTPLPSSSSQQQQLMTAPISNSVN 51


>At1g17440.1 68414.m02132 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 371 PSRPSPEHNSPQHSASTTSNEVKTTPESKSVD 466
           P  PSP  ++P  S+S+   ++ T P S SV+
Sbjct: 20  PMEPSPASSTPLPSSSSQQQQLMTAPISNSVN 51


>At5g54430.1 68418.m06779 universal stress protein (USP) family
           protein low similarity to early nodulin ENOD18 [Vicia
           faba] GI:11602747, ER6 protein [Lycopersicon esculentum]
           GI:5669654; contains Pfam profile PF00582: universal
           stress protein family
          Length = 242

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 380 PSPEHNSPQHSASTTSNEVKTTP 448
           PSP H+   HS+ST S+    TP
Sbjct: 20  PSPRHSHHHHSSSTPSSAATPTP 42


>At3g14890.2 68416.m01883 phosphoesterase identical to
           phosphoesterase [Arabidopsis thaliana] GI:21630064;
           contains Pfam profile PF00645: Poly(ADP-ribose)
           polymerase and DNA-Ligase Zn-finger region
          Length = 638

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 537 KLLSFEIVQFNARRRYVLDY*LEGSTDFDSGVVLTSLEVVDAECWGLL 394
           K  +FE V F  R   + D     + DFD  +  TS+++V A+ W L+
Sbjct: 444 KWKAFETVIFLERDDGLNDSEKIAAFDFDGCLAKTSVKIVGADAWSLM 491


>At3g14890.1 68416.m01882 phosphoesterase identical to
           phosphoesterase [Arabidopsis thaliana] GI:21630064;
           contains Pfam profile PF00645: Poly(ADP-ribose)
           polymerase and DNA-Ligase Zn-finger region
          Length = 694

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 537 KLLSFEIVQFNARRRYVLDY*LEGSTDFDSGVVLTSLEVVDAECWGLL 394
           K  +FE V F  R   + D     + DFD  +  TS+++V A+ W L+
Sbjct: 500 KWKAFETVIFLERDDGLNDSEKIAAFDFDGCLAKTSVKIVGADAWSLM 547


>At2g39110.1 68415.m04805 protein kinase, putative similar to
           protein kinase [Lophopyrum elongatum]
           gi|13022177|gb|AAK11674
          Length = 435

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 119 LEPIDTYNVNAPLTLRYKF*GLEYSYNGCPNLQTETH 9
           L P D +  +    ++ +F  L    NGCPNL T +H
Sbjct: 393 LTPKDAFEASRRERVKRRFVELLIGENGCPNLPTWSH 429


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,288,723
Number of Sequences: 28952
Number of extensions: 185471
Number of successful extensions: 457
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)