Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0398
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.7  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    26   3.9  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    26   3.9  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.2  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   6.9  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   6.9  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    25   6.9  
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    25   6.9  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   9.1  

>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = +3

Query: 165 IPLDLALQKFIIQTLEGELSQAGIFFDDQFTKEKFEVILDDQQFTPDEITVKASN 329
           +P  +    F+    +    +AG   ++QF K   ++  D   F+P E   K  N
Sbjct: 79  VPSKILFGSFLFYVKDRIPEKAGYIIEEQFCKRLQQIDYDAYSFSPKECNEKLKN 133


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 314 GQGVEQHGCRRRQARGETGRARLHFPSVHPPVHPADRIRGQRPGQHVV 457
           G+ +E+ GC R    G+  R  +  P+   PV PAD+      G  VV
Sbjct: 44  GKRLERLGCVRNLRIGQKFRGVVITPNGKVPVSPADKEYFDNGGASVV 91


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 275 YFRRSAIHSRRDHGQGVEQHGCRRRQARGETGRARL 382
           YF+     S+  H  G       RRQ+ G T   RL
Sbjct: 37  YFKNDTFSSKSSHSDGTVTGDTLRRQSSGATALERL 72


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +3

Query: 321 ASNNTVVVEGKH-EEKQDEHGFISRQ-FTRRYILPTGYEVNDLVSTLSSDGVLTVTAPKR 494
           ++++T V E +H +E+Q E   +    FT+  +     +V++ +  ++S  + TV  P  
Sbjct: 72  SASSTPVEEAQHAQEEQQEQTILQEPGFTQTIVEKDADQVDEPLEPIASSALGTVEPPTD 131

Query: 495 PPPNAA 512
             P+A+
Sbjct: 132 NKPSAS 137


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 443 GQHVVFRRRAHRHGAETTST*CGERIVPITKTGPAKQPEAASSKPE 580
           G+ + F     R+GA+     CGE    +   G   Q EA S  PE
Sbjct: 289 GEELTFDYNVDRYGAQAQPCYCGEPCC-VGYIGGKTQTEAQSKLPE 333


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 198 IQTLEGELSQAGIFFDDQ 251
           ++TLE ELSQAG+   +Q
Sbjct: 442 VRTLENELSQAGVNLQEQ 459


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 168 PLDLALQKFIIQTLEGELSQAGIFFDDQFTKEKFEVILDDQQ 293
           PL+L L+ FII + E   S     FD      +F V ++  Q
Sbjct: 452 PLNLKLRNFIISSSEDSTSPKAKEFDRPLPSTEFLVAINKSQ 493


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 308 DHGQGVEQHGCRRRQARGETGRARLHFPSVHPPVHPADRIRGQR 439
           D  QG E+      Q+   TGR +L    +H P  P  RI   R
Sbjct: 80  DSLQGFERTWKAVEQSLRRTGRPKLDVVLIHSPKWPVRRIESWR 123


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 278 FRRSA-IHSRRDHGQGVEQHGCRRRQARGETGRARLHFPSVHPPVH 412
           FR S   + ++ + Q  EQH       R  +  ++ +  S HPPVH
Sbjct: 241 FRSSRQTYPQQPNSQPCEQHPAHANLRRSVSLGSKDYLKSSHPPVH 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,154
Number of Sequences: 5004
Number of extensions: 44654
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)