Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0398
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0599 - 4448290-4448790 43 2e-04
01_01_0227 + 1933247-1933699 40 0.002
02_05_0972 + 33198035-33198277,33198366-33198641 39 0.003
02_02_0077 - 6586638-6587165 36 0.020
01_01_0231 + 1951047-1951499 36 0.020
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 36 0.020
01_01_0229 - 1943473-1943922 36 0.020
03_02_0484 + 8805053-8805538 35 0.062
03_02_0483 - 8804021-8804485 35 0.062
11_02_0041 - 7669692-7670312 34 0.082
06_01_0814 - 6163155-6163591,6163729-6164038 34 0.082
03_02_0485 - 8808139-8808618 34 0.082
09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410... 32 0.33
03_02_0478 + 8775892-8776377 32 0.33
05_07_0326 + 29274287-29274428,29274577-29275379 32 0.44
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 31 0.58
06_01_1017 - 7951985-7952425 31 0.76
02_05_0811 + 31939414-31939660,31939766-31940181 31 0.76
08_02_1491 + 27500532-27500972 31 1.0
04_03_0461 - 16165126-16165419,16165947-16166195,16168510-161686... 30 1.3
01_01_0228 + 1940149-1940649 30 1.8
08_01_0838 - 8185083-8185910 29 2.3
01_06_1448 - 37434159-37434242,37434875-37434968,37435077-374352... 29 2.3
07_01_0383 - 2856777-2858042,2858238-2858270,2858607-2858742,286... 29 3.1
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 29 4.1
05_03_0323 - 12424243-12424776 29 4.1
02_04_0468 - 23172561-23174201 29 4.1
03_04_0062 + 16965323-16966024 28 5.4
01_01_0707 - 5453933-5454619 28 5.4
12_02_1109 + 26151421-26153601 28 7.1
06_01_0569 + 4019254-4021996,4022121-4022272,4022356-4022427,402... 28 7.1
02_05_1160 + 34580680-34582659 28 7.1
02_03_0343 + 17961977-17962596,17962670-17963015,17965933-179662... 28 7.1
09_03_0205 - 13483981-13484291,13484402-13484531,13484742-13484939 27 9.4
02_04_0053 - 19276891-19277079,19277947-19278073,19278320-192784... 27 9.4
>01_01_0599 - 4448290-4448790
Length = 166
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +3
Query: 348 GKHEEKQDEHGFISRQ-----FTRRYILPTGYEVNDLVSTLSSDGVLTVTAPKRPPPNAA 512
G EEK++ ++ + F R+++LP +V D +S + DGVLTVT K PPP
Sbjct: 98 GGEEEKEESCKYLRMERRMGKFMRKFVLPDNADV-DKISAVCQDGVLTVTVEKLPPPEPK 156
Query: 513 K 515
K
Sbjct: 157 K 157
>01_01_0227 + 1933247-1933699
Length = 150
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +3
Query: 342 VEGKHEEKQDEHGFISRQFTRRYILPTGYEVNDLVSTLSSDGVLTVTAPK 491
V+GK++E+ S +F RR+ LP G V D VS +GVLTVT PK
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARV-DQVSASMDNGVLTVTVPK 135
>02_05_0972 + 33198035-33198277,33198366-33198641
Length = 172
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Frame = +3
Query: 285 DQQFTPDE---ITVKASNNTVVVEGKHEEKQDEHGFIS-------RQFTRRYILPTGYEV 434
D Q T +E + +K+SN + K EE++ E +I R F R++ LP +
Sbjct: 79 DIQVTLEEDRVLVMKSSNGAGNGKRKREEEEGECKYIRLERRASPRAFARKFRLPEDADT 138
Query: 435 NDLVSTLSSDGVLTVTAPKRPPP 503
+S +GVLTVT KRPPP
Sbjct: 139 GG-ISARCENGVLTVTVKKRPPP 160
>02_02_0077 - 6586638-6587165
Length = 175
Score = 36.3 bits (80), Expect = 0.020
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +3
Query: 393 QFTRRYILPTGYEVNDLVSTLSSDGVLTVTAPKRPPPNAAK 515
+F RR+ LP ++ D V DGVLTVT K+PPP K
Sbjct: 117 KFMRRFPLPESADL-DGVRAEYKDGVLTVTVDKKPPPEPKK 156
>01_01_0231 + 1951047-1951499
Length = 150
Score = 36.3 bits (80), Expect = 0.020
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Frame = +3
Query: 168 PLDLALQKFIIQTLEGELSQ-AGIFFDDQFTKEKFEVILDDQQFTPDEITVKASN-NTVV 341
P D + + T + + + A D + T E D +E+ V+ N +V
Sbjct: 20 PFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLV 79
Query: 342 VEGKH----EEKQDEHGFISR---QFTRRYILPTGYEVNDLVSTLSSDGVLTVTAPK 491
+ G+ E+K D+ + R QF RR+ LP +V D V +GVLTVT PK
Sbjct: 80 ISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKV-DQVKAGMENGVLTVTVPK 135
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 36.3 bits (80), Expect = 0.020
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Frame = +3
Query: 168 PLDLALQKFIIQTLEGELSQ-AGIFFDDQFTKEKFEVILDDQQFTPDEITVKASN-NTVV 341
P D + + T + + + A D + T E D +E+ V+ N +V
Sbjct: 20 PFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLV 79
Query: 342 VEGKH----EEKQDEHGFISR---QFTRRYILPTGYEVNDLVSTLSSDGVLTVTAPK 491
+ G+ E+K D+ + R QF RR+ LP +V+ + + L + GVLTVT PK
Sbjct: 80 ISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLEN-GVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 36.3 bits (80), Expect = 0.020
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Frame = +3
Query: 303 DEITVKASN-NTVVVEGKH----EEKQDEHGFISR---QFTRRYILPTGYEVNDLVSTLS 458
+E+ V+ N +V+ G+ E+K D+ + R QF RR+ LP +V D V
Sbjct: 65 EEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKV-DQVKASM 123
Query: 459 SDGVLTVTAPK 491
+GVLTVT PK
Sbjct: 124 ENGVLTVTVPK 134
>03_02_0484 + 8805053-8805538
Length = 161
Score = 34.7 bits (76), Expect = 0.062
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Frame = +3
Query: 228 AGIFFDDQFTKEKFEVILDDQQFTPDEITVKASNNTVV-VEGKH----EEKQDEHGFISR 392
AG D + T E D +E+ V+ + V+ + G+ EEK D+ + R
Sbjct: 52 AGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVER 111
Query: 393 ---QFTRRYILPTGYEVNDLVSTLSSDGVLTVTAPKRPP 500
+F RR+ LP + + +++ + GVLTVT PK P
Sbjct: 112 SSGKFLRRFRLPENTKPEQIKASMEN-GVLTVTVPKEEP 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 34.7 bits (76), Expect = 0.062
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Frame = +3
Query: 228 AGIFFDDQFTKEKFEVILDDQQFTPDEITVKASNNTVV-VEGKH----EEKQDEHGFISR 392
AG D + T E D +E+ V+ + V+ + G+ EEK D+ + R
Sbjct: 45 AGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVER 104
Query: 393 ---QFTRRYILPTGYEVNDLVSTLSSDGVLTVTAPKRPP 500
+F RR+ LP + + +++ + GVLTVT PK P
Sbjct: 105 SSGKFLRRFRLPENTKPEQIKASMEN-GVLTVTVPKEEP 142
>11_02_0041 - 7669692-7670312
Length = 206
Score = 34.3 bits (75), Expect = 0.082
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 393 QFTRRYILPTGYEVNDLVSTLSSDGVLTVTAPKRP 497
+F RR+ +P G +V + + L DGVLTVT PK P
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPKVP 174
>06_01_0814 - 6163155-6163591,6163729-6164038
Length = 248
Score = 34.3 bits (75), Expect = 0.082
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 303 DEITVKASNNTVVVEGKHE-EKQDEHGFISRQFTRRYILPTGYEVNDLVSTLSSDGVLTV 479
+ + V A N++V++G+ E + +D+ ++TRR LP D + +GVL V
Sbjct: 170 EHVKVWAEQNSLVIKGEGEKDPEDDADAAPPRYTRRIELPADAFKMDKIKAEMKNGVLRV 229
Query: 480 TAPK 491
PK
Sbjct: 230 AVPK 233
>03_02_0485 - 8808139-8808618
Length = 159
Score = 34.3 bits (75), Expect = 0.082
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Frame = +3
Query: 228 AGIFFDDQFTKEKFEVILDDQQFTPDEITVKASNNTVV-VEGKH----EEKQDEHGFISR 392
AG D + T E D +E+ V+ + ++ + G+ EEK D+ + R
Sbjct: 50 AGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVER 109
Query: 393 ---QFTRRYILPTGYEVNDLVSTLSSDGVLTVTAPKRPP 500
+F RR+ LP + + +++ + GVLTVT PK P
Sbjct: 110 SSGKFLRRFRLPENTKPEQIKASMEN-GVLTVTVPKEEP 147
>09_04_0075 -
14340458-14340551,14340643-14340814,14340895-14341066,
14341617-14341811,14341886-14342053,14342150-14342335,
14342797-14342881,14342896-14343206,14344222-14344569
Length = 576
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 354 HEEKQDEHGFISRQFTRRYILPTGYEVND 440
H + H FI+ Q + Y LP GYE+ND
Sbjct: 157 HSLEAGHHVFINLQTEKAYCLPDGYEIND 185
>03_02_0478 + 8775892-8776377
Length = 161
Score = 32.3 bits (70), Expect = 0.33
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Frame = +3
Query: 228 AGIFFDDQFTKEKFEVILDDQQFTPDEITVKASNNTVV-VEGKH----EEKQDEHGFISR 392
AG D + T E D +E+ V+ + ++ + G+ EEK D+ + R
Sbjct: 52 AGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVER 111
Query: 393 ---QFTRRYILPTGYEVNDLVSTLSSDGVLTVTAPK 491
+F RR+ LP + + +++ + GVLTVT PK
Sbjct: 112 SSGKFLRRFRLPDNAKPEQIKASMEN-GVLTVTVPK 146
>05_07_0326 + 29274287-29274428,29274577-29275379
Length = 314
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +3
Query: 336 VVVEGKHEEKQDEHGFISRQFTRRYILPTGYEVNDLVSTLSSDGVLTVTAPKRPPPNAA 512
+ V G+ +H + +F + + LP+ ++D+ + VLT+T PKRP P ++
Sbjct: 64 LTVRGQRPAAGSKH---NTRFHKVFQLPSNANIDDITGRFEAS-VLTITVPKRPAPTSS 118
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 31.5 bits (68), Expect = 0.58
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Frame = +2
Query: 308 DHGQGVEQHGCRRRQARGETGRARLHFPSVHPPVHPADRIRGQRPGQHVVFRRRAHRHGA 487
D + R ++ GE+GR+ SV P H R RG+R + R+ HG
Sbjct: 450 DRRDSARERRADRDESNGESGRSSRRGRSVSPEEH---RHRGRRESRQSPRSSRSAAHGE 506
Query: 488 ETTS-T*CGERIV-PITKTGPAKQPEAASSKPEQQQP 592
+T+S T R V P + EA +K E+Q+P
Sbjct: 507 DTSSVTDAASRSVDPDSLVKMNATAEALEAK-EKQKP 542
>06_01_1017 - 7951985-7952425
Length = 146
Score = 31.1 bits (67), Expect = 0.76
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 309 ITVKASNNTVVVEGKHEEKQDEHGFISR----QFTRRYILPTGYEVNDLVSTLSSDGVLT 476
+TV+ + E + E ++D ++ +F R LP V + +++ + GVLT
Sbjct: 65 LTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDN-GVLT 123
Query: 477 VTAPKRPPP 503
V PK P P
Sbjct: 124 VVVPKEPAP 132
>02_05_0811 + 31939414-31939660,31939766-31940181
Length = 220
Score = 31.1 bits (67), Expect = 0.76
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +3
Query: 255 TKEKFEVILDDQQFTPDEITVKASNNTVVVEGKHEEK--QDEHGFISRQFTRRYILPTGY 428
++E + +D + + V A N++V++G+ E++ +DE +R R + P Y
Sbjct: 126 SEEALHLRVDMPGLGKEHVKVWAEQNSLVIKGEGEKEAGEDEGAAPARYSGRIELAPEVY 185
Query: 429 EVNDLVSTLSSDGVLTVTAPK 491
++ + + + + GVL V PK
Sbjct: 186 RMDQIKAEMKN-GVLKVVVPK 205
>08_02_1491 + 27500532-27500972
Length = 146
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +3
Query: 453 LSSDGVLTVTAPKRPPPNAAKGSYRSRK 536
+S+ V APK PPP AA GSYR+RK
Sbjct: 2 ISAPSVGIAFAPK-PPPAAAVGSYRARK 28
>04_03_0461 -
16165126-16165419,16165947-16166195,16168510-16168645,
16171251-16171469,16172738-16173116,16173660-16173918,
16176052-16176315
Length = 599
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 380 LHFPSVHPPVHPADRIRGQRPGQHVVFRRR--AHRHGAETTST 502
+H + HPP+ P + V FRR+ AHRH A+ ST
Sbjct: 16 VHARTGHPPIWPPVGLLSAGAPAKVSFRRQSNAHRHAAQVVST 58
>01_01_0228 + 1940149-1940649
Length = 166
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Frame = +3
Query: 303 DEITVKASN-NTVVVEGKHEEKQDEHGFISRQFTR-------RYILPTGYEVNDLVSTLS 458
+E+ V+ N +V+ G+ +++E G S R R+ LP V DLV
Sbjct: 65 EEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVV-DLVRASM 123
Query: 459 SDGVLTVTAPK 491
G+LTVT PK
Sbjct: 124 DGGMLTVTVPK 134
>08_01_0838 - 8185083-8185910
Length = 275
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 342 VEGKHEEKQDEHGFISRQFTRRYILPTGYE 431
++ EE+ EH + R+FT +YI+ +GY+
Sbjct: 194 IKKAEEEESLEHNELWREFTDKYIIASGYD 223
>01_06_1448 -
37434159-37434242,37434875-37434968,37435077-37435250,
37435536-37435627,37435947-37436056,37437274-37437349,
37437445-37437537,37437617-37437817
Length = 307
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 383 HFPSVHPPVHPADRIRGQRPGQHVVFRRRAHRHG 484
HF S++P V A +RP + VV + H HG
Sbjct: 91 HFTSLYPQVSEATVTIAERPWERVVVDGKPHSHG 124
>07_01_0383 -
2856777-2858042,2858238-2858270,2858607-2858742,
2860778-2860890
Length = 515
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 336 VVVEGKHEEKQDE--HGFISRQFTRRYILPTGYEVNDLVSTLSSDGVLTV 479
+++E ++K+D+ GF+ R R L G +V+ LV + DG+ V
Sbjct: 50 LLLENSSKQKRDQGIKGFLYRSLEERSFLSAGIQVDGLVLGMFMDGIAGV 99
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 474 TVTAPKRPPPNAAKGSYRSRKPDP 545
T P RPPP A GS ++R P P
Sbjct: 607 TGPGPPRPPPPAMPGSSKTRPPPP 630
>05_03_0323 - 12424243-12424776
Length = 177
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/63 (36%), Positives = 27/63 (42%)
Frame = +2
Query: 287 SAIHSRRDHGQGVEQHGCRRRQARGETGRARLHFPSVHPPVHPADRIRGQRPGQHVVFRR 466
+A H+ R HG+G G R RG GR H H AD + Q G RR
Sbjct: 120 AAAHAMRPHGRGRGNGGNGR--GRGSAGRG--HAIGAHEDDVDADFVLDQDDGHQ---RR 172
Query: 467 RAH 475
RAH
Sbjct: 173 RAH 175
>02_04_0468 - 23172561-23174201
Length = 546
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 502 GGGRFGAVTVSTPSEDNVLTRSLTSYPVGRMYR 404
GGG G +T + + ++VL + +YP G YR
Sbjct: 93 GGGSSGVITSAPANVEHVLRANFGNYPKGPYYR 125
>03_04_0062 + 16965323-16966024
Length = 233
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -3
Query: 118 SAGPVVWRGARYAPSHPTNRETSLV 44
+AGP W +Y P TN + S++
Sbjct: 14 AAGPTAWSSQKYRPGFATNAQRSII 38
>01_01_0707 - 5453933-5454619
Length = 228
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = +2
Query: 371 RARLHFPSVHPPV-HPADRI-RGQRPGQHVVFRRRAHRHGAETTST*CGERIVPITKTGP 544
RA L+FP + P + PA R + + H+H + +TST P + P
Sbjct: 96 RAVLNFPDLAPALPRPASLAPRDVQAAAALAAVMHHHKHPSSSTSTSSPPAAPPPDEHHP 155
Query: 545 ---AKQPEAASSKPEQQQP 592
+QPE++ +QQQP
Sbjct: 156 RHEPQQPESSREDDQQQQP 174
>12_02_1109 + 26151421-26153601
Length = 726
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 255 TKEKFEVI--LDDQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTRRYILPTGY 428
T E +E++ +++ +TP +IT + EGK +E D + Q ++ PT
Sbjct: 424 TSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCD----VVVQMLQKGFFPTTV 479
Query: 429 EVNDLVSTLSSD 464
E+N L+ L D
Sbjct: 480 EINLLIHALCKD 491
>06_01_0569 +
4019254-4021996,4022121-4022272,4022356-4022427,
4022521-4022673,4022749-4022912,4022990-4023137,
4023530-4023652,4023774-4023861,4023951-4024129
Length = 1273
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 527 ITKTGPAKQPEAASSKPEQQQPREQMVPIVTSLNP 631
+ P +QP+ AS P+QQQ ++Q P V S P
Sbjct: 294 VASYAPHQQPQVASYAPQQQQQQQQ--PQVASYIP 326
>02_05_1160 + 34580680-34582659
Length = 659
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 139 PSSDPCRSAGPVVWRGARYAPSHP 68
P+ PC+ G +V + +RY P HP
Sbjct: 193 PNPGPCQGNGGMVVKISRYGPPHP 216
>02_03_0343 +
17961977-17962596,17962670-17963015,17965933-17966291,
17966384-17966636
Length = 525
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/66 (27%), Positives = 25/66 (37%)
Frame = +2
Query: 356 RGETGRARLHFPSVHPPVHPADRIRGQRPGQHVVFRRRAHRHGAETTST*CGERIVPITK 535
R +GR RL P P + + R H R A RHGA R+ +
Sbjct: 23 RRRSGRLRLRLPPEPPGLPLVGHLHLFRKPLHRTLARLAARHGAVFRLRLGSRRVAVVVS 82
Query: 536 TGPAKQ 553
+ PA +
Sbjct: 83 SAPAAE 88
>09_03_0205 - 13483981-13484291,13484402-13484531,13484742-13484939
Length = 212
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +2
Query: 281 RRSAIHSRRDHGQGVEQHGCRRRQARGETGRARLHFPSVHPPVHPADR 424
RR A+ S DH + GCRR + G R H P HP DR
Sbjct: 40 RRVALLSSVDHPAPTQLRGCRR--SNQHQGVLRQHDPGA--TAHPLDR 83
>02_04_0053 -
19276891-19277079,19277947-19278073,19278320-19278435,
19279089-19279382
Length = 241
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 423 GYEVNDLVSTLSSDGVLTVTAPKRPPPNA 509
G + L+ TL++DG P PPPNA
Sbjct: 58 GAALGGLMGTLTADGGSPFPTPPPPPPNA 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,933,645
Number of Sequences: 37544
Number of extensions: 358301
Number of successful extensions: 1604
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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