Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0398
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.35 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   5.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 548  KQPEAASSKPEQQQPREQ 601
            +QP+  S +P+QQQP+ Q
Sbjct: 1515 QQPQQQSQQPQQQQPQPQ 1532



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 548  KQPEAASSKPEQQQPREQ 601
            +QP+    + +QQQP++Q
Sbjct: 1503 QQPQQQQQQQQQQQPQQQ 1520



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 545  AKQPEAASSKPEQQQPREQ 601
            ++QP+    +P+QQQ ++Q
Sbjct: 1521 SQQPQQQQPQPQQQQQQQQ 1539



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 530  TKTGPAKQPEAASSKPEQQQPREQMV 607
            T T   +QP+    + +QQQ ++Q +
Sbjct: 1442 TLTSAPQQPQQQQQQQQQQQQQQQQL 1467



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 551  QPEAASSKPEQQQPREQ 601
            QP+    + +QQQP++Q
Sbjct: 1530 QPQQQQQQQQQQQPQQQ 1546


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
 Frame = +1

Query: 385  FPVSSPAGTSCRPDTRSTTWSARCL---PTACSPSRRRNDLHLMRRKDR 522
            F  S  +    RPDT S  W+ + +   PT    + +     +MR   R
Sbjct: 1135 FSTSFDSKVMTRPDTDSENWTPKMMAVEPTDKQANSKTRRQEMMREAGR 1183



 Score = 21.4 bits (43), Expect = 7.5
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = +3

Query: 207  LEGELSQAGIFFDDQFTKEKFEVILDDQQFTPDEITVKASNNTVVVEGKHEEKQDEHG 380
            LEGE     IF     +K       D + +TP  + V+ ++     + + +E   E G
Sbjct: 1125 LEGEQKDPVIFSTSFDSKVMTRPDTDSENWTPKMMAVEPTDKQANSKTRRQEMMREAG 1182


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 161 LMEDNRSSFFRPMPKCWSSSL 99
           L   N ++FFR M + W ++L
Sbjct: 338 LTRQNPAAFFRGMMQAWMTAL 358


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 432 VNDLVSTLSSDGVLTVTAP 488
           VN+ V   S + VLTVTAP
Sbjct: 289 VNNSVGGESVETVLTVTAP 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,244
Number of Sequences: 438
Number of extensions: 3405
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)