Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0397
         (455 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2RL71 Cluster: Putative Di/Tri-peptide transport syste...    32   6.7  
UniRef50_A0UJN9 Cluster: Putative uncharacterized protein precur...    32   6.7  
UniRef50_A6SVL7 Cluster: Uncharacterized conserved protein; n=1;...    31   8.9  
UniRef50_A5V4R5 Cluster: TonB-dependent receptor; n=2; Sphingomo...    31   8.9  

>UniRef50_A2RL71 Cluster: Putative Di/Tri-peptide transport system
           permease protein; n=1; Lactococcus lactis subsp.
           cremoris MG1363|Rep: Putative Di/Tri-peptide transport
           system permease protein - Lactococcus lactis subsp.
           cremoris (strain MG1363)
          Length = 339

 Score = 31.9 bits (69), Expect = 6.7
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -3

Query: 180 LTLRTRQLIVAARLTTKLRKSLSLEVILPILKALALSVDLGSATSLV 40
           ++LRTR  + AAR + + R  + +  ILP L A+  S  +G+ T+ +
Sbjct: 182 MSLRTRDFVEAARASGESRLRIIIFEILPNLTAILASTFIGTVTAAI 228


>UniRef50_A0UJN9 Cluster: Putative uncharacterized protein precursor;
            n=1; Burkholderia multivorans ATCC 17616|Rep: Putative
            uncharacterized protein precursor - Burkholderia
            multivorans ATCC 17616
          Length = 1690

 Score = 31.9 bits (69), Expect = 6.7
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -2

Query: 304  RXQTEDSRK*SRRXFRWADPCELCRSSDADSPDASTGRRR 185
            R    D R+ +RR  R  DP      SD D  DA+ GRRR
Sbjct: 1474 RSADPDPRRAARRLHRARDPVRELHPSDHDPVDAAVGRRR 1513


>UniRef50_A6SVL7 Cluster: Uncharacterized conserved protein; n=1;
           Janthinobacterium sp. Marseille|Rep: Uncharacterized
           conserved protein - Janthinobacterium sp. (strain
           Marseille) (Minibacterium massiliensis)
          Length = 892

 Score = 31.5 bits (68), Expect = 8.9
 Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
 Frame = -3

Query: 285 HESEADAXSGGRTLVNCVDP-RTRTALT---RLPAGAVNLTLRTRQLIVAARLTTKLRKS 118
           H  EA+A +G +T+++ +   +T  A+    R+ A  +   L   Q+IVA     KL  +
Sbjct: 280 HNLEAEAKAGAQTIMDWLQQGKTNIAIVAQDRVVARRIRALLERAQVIVADETGWKLSTT 339

Query: 117 LSLEVILPILKALALSVDLGSATSLVDTATIAVNTNNRA 1
            +   +   L+ +A   +  +    + +  +  NT+N+A
Sbjct: 340 RAAAALASWLELVAARAETIALLDFLKSPFVFANTDNKA 378


>UniRef50_A5V4R5 Cluster: TonB-dependent receptor; n=2; Sphingomonas
           wittichii RW1|Rep: TonB-dependent receptor -
           Sphingomonas wittichii RW1
          Length = 802

 Score = 31.5 bits (68), Expect = 8.9
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 381 YLHVNVRICILASPNLYGKKKCSSRXVXKLKIHESEADAXSGGRTLVNCVDPRT 220
           Y  VN R+ +    N +G     +  +    I  S++ A + GRTLVN   PRT
Sbjct: 740 YQLVNARLGVEGPDNKWGAYLFVTNLLDDTAITRSQSSAIAVGRTLVNSAAPRT 793


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 351,361,923
Number of Sequences: 1657284
Number of extensions: 5326347
Number of successful extensions: 13959
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13958
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23931581955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)