Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0397
         (455 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    27   0.11 
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    27   0.11 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    20   9.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    20   9.5  

>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 14  VLTAIVAVSTNEVADPRSTDRANALSIGSITSSDRLLRSFV 136
           VL   VAV +   A  + T + + + +  I  SDRLL+++V
Sbjct: 5   VLVLFVAVLSVVFAADKYTTKYDNIDLNQILKSDRLLKNYV 45


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 14  VLTAIVAVSTNEVADPRSTDRANALSIGSITSSDRLLRSFV 136
           VL   VAV +   A  + T + + + +  I  SDRLL+++V
Sbjct: 5   VLVLFVAVVSVVFAADKYTTKYDNIDLNQILKSDRLLKNYV 45


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 413 FLCKQKNKXSCI 378
           ++CK K++ SCI
Sbjct: 72  YVCKAKDEGSCI 83


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 413 FLCKQKNKXSCI 378
           ++CK K++ SCI
Sbjct: 72  YVCKAKDEGSCI 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,322
Number of Sequences: 336
Number of extensions: 1435
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10406187
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)