Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0397
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0234 - 1743784-1744017,1748103-1749068                           29   1.3  
07_01_0895 + 7506460-7507929                                           29   2.3  
06_03_0974 - 26459747-26460190,26460278-26460946                       29   2.3  
08_02_0324 - 15766862-15766871,15767041-15767741                       27   5.4  
01_05_0309 - 20713774-20713818,20713838-20713915,20714044-207142...    27   7.2  
06_03_1332 - 29403320-29407804                                         27   9.5  
04_01_0300 - 4014636-4015544                                           27   9.5  
02_01_0582 + 4315336-4315956,4316060-4316188,4316282-4316581           27   9.5  

>05_01_0234 - 1743784-1744017,1748103-1749068
          Length = 399

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 25/84 (29%), Positives = 37/84 (44%)
 Frame = -3

Query: 294 LKIHESEADAXSGGRTLVNCVDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSL 115
           L +H     A  GG       DP+   A      G + + +R  +      L  +LRKSL
Sbjct: 179 LPLHMCRCCAAGGGEK----TDPKANIASASQLRG-LGVKIRMAKRDRGGILDVRLRKSL 233

Query: 114 SLEVILPILKALALSVDLGSATSL 43
            + +I P L+  ALSV+  +A  L
Sbjct: 234 EIRLIPPELEVPALSVEEATAVLL 257


>07_01_0895 + 7506460-7507929
          Length = 489

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 291 KIHESEADAXSGGRTLVNCVDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTT 133
           +IH+ + D   GGR ++N  D  +   L RLP   + L L++  +   ++ TT
Sbjct: 124 EIHKLDIDGGGGGRLMMNAGDMASLKTLRRLPEPPL-LRLQSPTVHPCSKFTT 175


>06_03_0974 - 26459747-26460190,26460278-26460946
          Length = 370

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 253 ADPCELCRSSDADSPDASTGRRRESHVENPPVNCSSTA 140
           AD   LC + DAD  DA+   RR + V   P+  ++ A
Sbjct: 69  ADAAVLCAACDADIHDANPLARRHARVPVAPIGSAAAA 106


>08_02_0324 - 15766862-15766871,15767041-15767741
          Length = 236

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +2

Query: 8   LFVLTAIVAVSTNEVADPRSTDRANALSIGSITSSDRLLRSFVVSRAATINWRVLNV 178
           ++VL    +V T      R TD    + I      DR  RSF++S AAT +  +LN+
Sbjct: 45  VYVLERHNSVWTRYETTSRCTDLTAKIIISGFVVLDR--RSFMISDAATFDCLLLNI 99


>01_05_0309 - 20713774-20713818,20713838-20713915,20714044-20714222,
            20714296-20714556,20715222-20715393,20715501-20715662,
            20716435-20716863,20717729-20717785,20717872-20718842,
            20719098-20719182,20719269-20719637,20719756-20720001,
            20720090-20720362,20720663-20720827,20721328-20721556,
            20721727-20722168,20723152-20724138,20724352-20724517,
            20725070-20725728,20725820-20726186
          Length = 2113

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 256  WADPCELCRSSDADSPDASTGRRRESHVEN--PPVNCSSTA 140
            WA  CE   +S + SP    GRR+ SH+ +  P ++  S A
Sbjct: 1703 WAG-CESTPTSTSFSPSVGLGRRKGSHLSSGGPTISLGSLA 1742


>06_03_1332 - 29403320-29407804
          Length = 1494

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 390 KXVYLHVNVRI--CILASPNLYGKKKCSSRXVXKLKIHESEAD 268
           K V+ H +V++  C+  + NLY  K+  S+ + KLK  E   D
Sbjct: 325 KEVHNHFDVKVWVCVSLNFNLYRLKEEISKWIPKLKDDEKYVD 367


>04_01_0300 - 4014636-4015544
          Length = 302

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -2

Query: 232 RSSDADSPDASTGRRRESHVENPPVNCSSTAHNKAS*ESI 113
           R+ +   P + +GR RE     PP++ S T+ N  + +++
Sbjct: 7   RNRERSDPRSRSGRSREPSKVRPPLSSSFTSQNNPASDTL 46


>02_01_0582 + 4315336-4315956,4316060-4316188,4316282-4316581
          Length = 349

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 253 ADPCELCRSSDADSPDASTGRRRESHVENPPVNCSS 146
           AD   LC + D+D  DA+   RR   V   P+  S+
Sbjct: 76  ADAAALCAACDSDIHDANPLARRHERVPVHPIGSSA 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,530,959
Number of Sequences: 37544
Number of extensions: 151444
Number of successful extensions: 380
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)