Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0397
         (455 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)         33   0.15 
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.79 
SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   1.8  
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18)           27   9.7  
SB_34508| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
          Length = 1693

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 282 ESEADAXSGGRTLVNCVDPRTRTALTRLPAGAVNLTLRTRQLIV-AARLTTKLRKSLS 112
           ES  DA      L N V    R  L + P G +NL +RTRQLI  +  L T  R+++S
Sbjct: 3   ESNGDA---AERLTNLVRDCVREELRKNPGGNINLLMRTRQLIANSPLLGTASREAVS 57


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
 Frame = -3

Query: 291 KIHESEADAXSGGRTLVNCVDPRTRTALTRLPAG--------AVNLTLRTRQLIVAARLT 136
           +I E + D    GR +  C+ P T T  T   A         A   T+RT      + +T
Sbjct: 311 RICEYKKDCSQAGR-VPRCISPTTETLTTETIAASQLTPSSSATTTTIRTNTKTTESAIT 369

Query: 135 TKLRKSLSLEVILPI--LKALALSVDLGSATSLVDTATI 25
           T L  S SL VILP     + ALS+++     L+  A I
Sbjct: 370 TSL--STSLPVILPTSSKSSSALSLEVLVVLVLLSVACI 406


>SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
 Frame = -3

Query: 291 KIHESEADAXSGGRTLVNCVDPRTRTALTRLPAG--------AVNLTLRTRQLIVAARLT 136
           +I E + D    GR +  C+ P T T  T   A         A   T+RT      + +T
Sbjct: 469 RICEYKKDCSQAGR-VPRCIGPTTATLTTETIAASQLTPSSSATTTTIRTNTKTTESAIT 527

Query: 135 TKLRKSLSLEVILPI--LKALALSVDLGSATSLVDTATI 25
           T L  S SL VILP     + ALS+++     L+  A I
Sbjct: 528 TSL--STSLPVILPTSSKSSSALSLEVLVVLVLLSVACI 564


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = -3

Query: 237 CVDPRTRTALTRLPAGAVNLTLRTRQLIVA-ARLTTKLRKSLSLEVILPILKALALSVDL 61
           CV P +R  L  +P   V+++  +RQL+V+ +    +L  S+   +     +AL L +D+
Sbjct: 85  CVSPGSRQFLVSIPPTLVSVSSMSRQLLVSFSPAFHQLLASVLSTMRALFARALQLVIDM 144

Query: 60  GSATSLVDTATIAVNTN 10
            +     D +  +V +N
Sbjct: 145 ATNPYKDDKSASSVESN 161


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 393 QKXVYLHVNVRICILASPNLYGKKKCSS 310
           Q+ VYLH ++ +C  + PN    + CSS
Sbjct: 441 QQFVYLHCHLLVCNASDPNSRCAQSCSS 468


>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1531

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 113 DRLLRSFVVSRAATINWRVLNV 178
           D LLR+FV S+A   NW + +V
Sbjct: 630 DALLRAFVFSKAQDTNWSLFSV 651


>SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18)
          Length = 1076

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 235 CRSSDADSPDASTGRRRESHVENPPVNCSSTAH 137
           CR +D DS +  +G     HVE+  V   S AH
Sbjct: 768 CRVADLDSTEKGSGEAALFHVESGLVYVGSHAH 800


>SB_34508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 232 RSSDADSPDASTGRRRESHVENPPVNCSSTAHNKAS*ESIT*SNTSDTQ 86
           R S+   P ++ G    S + NPP   S    + +   + + SNT D Q
Sbjct: 54  RDSNRTRPQSANGSSSHSPLNNPPTTSSPGNASSSGNSTTSPSNTRDGQ 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,097,630
Number of Sequences: 59808
Number of extensions: 181793
Number of successful extensions: 400
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)