Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0397
         (455 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   4.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   6.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -3

Query: 234 VDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLEVILPILKALALS 70
           V  +  + L R PAG+V+      + +VA    T + K  ++     ILK +  S
Sbjct: 74  VHAQVYSCLARSPAGSVHSRDVNVRAVVAQYYDTDVNKEYAIRGNSAILKCVVPS 128


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 198 VDASGLSASEDRHSSQGSAHRKXRRLHFRES 290
           ++   L  S+D H S G    K R +  R +
Sbjct: 48  IEKQNLHESDDLHESDGRVGGKRRNILLRRT 78


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 141 AVLLQLTGG 167
           AVLLQLTGG
Sbjct: 94  AVLLQLTGG 102


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +3

Query: 198 VDASGLSASEDRHSSQGSAHRKXRRLHFRE 287
           VD  GLS  + +    G    +   +HF++
Sbjct: 518 VDFEGLSGDKFKFDKNGDGPARYNIIHFKQ 547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,040
Number of Sequences: 438
Number of extensions: 1447
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)