Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0397
         (455 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19810.1 68416.m02509 expressed protein contains Pfam PF02620...    28   3.4  
At2g39830.1 68415.m04892 LIM domain-containing protein contains ...    27   7.9  
At2g17265.1 68415.m01994 homoserine kinase (HSK) identical to ho...    27   7.9  

>At3g19810.1 68416.m02509 expressed protein contains Pfam PF02620:
           Uncharacterized ACR, COG1399
          Length = 321

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -2

Query: 280 K*SRRXFRWADPCELCRSSDADSPDASTG-RRRESHVENPPVNCSSTAHNK--AS*ESIT 110
           K SR  F   + C L  SS A  P+ +TG R+  S++   P+     A ++   S ES T
Sbjct: 17  KQSRPSFLKLETCTLSLSSPAGYPNFTTGIRKHISYLFTEPIKLPRLAKSRILVSQESFT 76

Query: 109 *SNTSD 92
            ++T D
Sbjct: 77  ETSTID 82


>At2g39830.1 68415.m04892 LIM domain-containing protein contains
           Pfam profile PF00412: LIM domain
          Length = 503

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 229 SSDADSPDASTGRRRESHVENP 164
           SS + SP +S G  R SH+ NP
Sbjct: 6   SSSSSSPSSSYGVARVSHISNP 27


>At2g17265.1 68415.m01994 homoserine kinase (HSK) identical to
           homoserine kinase [Arabidopsis thaliana]
           gi|4927412|gb|AAD33097
          Length = 370

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 153 VAARLTTKLRKSLSLEVILPILKALALSVDLGSATSLVDTATIAVN 16
           +AA  T K+    S+ + L + K L L   LGS+ +    A +AVN
Sbjct: 119 IAAIATMKMLGIRSVGLSLDLHKGLPLGSGLGSSAASAAAAAVAVN 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,619,366
Number of Sequences: 28952
Number of extensions: 118994
Number of successful extensions: 251
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)