Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0395
         (396 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q08022 Cluster: Inner membrane protein yjgN; n=10; Ente...    35   0.66 
UniRef50_Q6MA31 Cluster: Putative deoxyribonuclease TatD; n=1; C...    32   4.6  
UniRef50_A0A8Y2 Cluster: Putative uncharacterized protein; n=2; ...    32   4.6  
UniRef50_Q6FV01 Cluster: Similarity; n=1; Candida glabrata|Rep: ...    32   4.6  
UniRef50_A5PMQ7 Cluster: Novel protein; n=2; Danio rerio|Rep: No...    31   6.1  
UniRef50_A7E8P9 Cluster: Predicted protein; n=1; Sclerotinia scl...    31   6.1  
UniRef50_UPI0000498521 Cluster: conserved hypothetical protein; ...    31   8.1  
UniRef50_Q4YHZ0 Cluster: Putative uncharacterized protein; n=6; ...    31   8.1  

>UniRef50_Q08022 Cluster: Inner membrane protein yjgN; n=10;
           Enterobacteriaceae|Rep: Inner membrane protein yjgN -
           Salmonella typhimurium
          Length = 395

 Score = 34.7 bits (76), Expect = 0.66
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 103 LFLRYYG-VCSCYFYYFKREIIVLPYLY 23
           L L+YYG + +CYF YF   I+V  YLY
Sbjct: 268 LILQYYGQIMACYFLYFLAIIVVTSYLY 295


>UniRef50_Q6MA31 Cluster: Putative deoxyribonuclease TatD; n=1;
           Candidatus Protochlamydia amoebophila UWE25|Rep:
           Putative deoxyribonuclease TatD - Protochlamydia
           amoebophila (strain UWE25)
          Length = 265

 Score = 31.9 bits (69), Expect = 4.6
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +2

Query: 134 INKLHHNISFIHSCLQLFDS-VYKSLRIFTTRREKKKKHDVLNLC 265
           ++++ +++SFI S   L  S VY+ + +   R +K+  H ++N+C
Sbjct: 1   MDRMSYSLSFIDSHAHLTSSPVYEQIDVLLERAQKEHVHQIVNIC 45


>UniRef50_A0A8Y2 Cluster: Putative uncharacterized protein; n=2;
           Ipomoea trifida|Rep: Putative uncharacterized protein -
           Ipomoea trifida (Morning glory)
          Length = 853

 Score = 31.9 bits (69), Expect = 4.6
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 122 PFFKINKLHHNISFIHSCLQLFDSV-YKSLRIFTTRREKKKKHDVLNLCV*QLCNSCLRM 298
           P++K N L HN+  +H    +FD++ Y  + +  TR+ K      L++   Q    C+R 
Sbjct: 597 PYWKDNLLRHNLDVMHIEKNVFDNIFYTVMDVKGTRKNKDTPATRLDIKEFQTEQHCIRK 656

Query: 299 S 301
           S
Sbjct: 657 S 657


>UniRef50_Q6FV01 Cluster: Similarity; n=1; Candida glabrata|Rep:
           Similarity - Candida glabrata (Yeast) (Torulopsis
           glabrata)
          Length = 115

 Score = 31.9 bits (69), Expect = 4.6
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +3

Query: 111 KFVTRFSKLTNCIIISPSSTHV-FNYLILYINR*EYLQQEEKRKRNTMY*IFVFDNYV 281
           K +TR++   N +I  P + H   +++I+Y+N+ +Y +  EK KRN+     VF  +V
Sbjct: 54  KHITRYTY--NHLIWPPINHHTRTHHMIIYVNQDKYSKVREKEKRNSEKNFAVFHIFV 109


>UniRef50_A5PMQ7 Cluster: Novel protein; n=2; Danio rerio|Rep: Novel
           protein - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 161

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 131 KINKLHHNISFIHSCLQLFDSVYKSLRIFTTRREKKKKH 247
           K+N L H+    ++C  + +S YKS+ +    ++KK  H
Sbjct: 84  KLNNLQHSDKGSYTCYIINESKYKSVNLIVEEKQKKTSH 122


>UniRef50_A7E8P9 Cluster: Predicted protein; n=1; Sclerotinia
           sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
           sclerotiorum 1980
          Length = 231

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 181 LKT*VDEGDIMMQFVNFEKRVTNFCYLFLRYYGVCSCYFYYFKREIIV 38
           LK  +D+G I++ + +F   V NF  + L  YG+   Y Y+ +   I+
Sbjct: 137 LKQALDDGAIVLAWGSFLNNVINFIGVGLALYGIAGLYQYFSQDNAII 184


>UniRef50_UPI0000498521 Cluster: conserved hypothetical protein;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
           hypothetical protein - Entamoeba histolytica HM-1:IMSS
          Length = 741

 Score = 31.1 bits (67), Expect = 8.1
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -1

Query: 324 RFIQRYIFDILK----HELHNCQTQRFNTSCFFFFSLLV 220
           R+ Q + FD  K    H  HNC T+ F+ +  +FF  L+
Sbjct: 228 RYYQSFTFDAFKLCRSHNCHNCLTKNFDKNAEYFFVPLI 266


>UniRef50_Q4YHZ0 Cluster: Putative uncharacterized protein; n=6;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 389

 Score = 31.1 bits (67), Expect = 8.1
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 119 YPFFKINKLHHNISFIHSCL-QLFDSVYKSLRIFTTRREKKKK 244
           Y   ++N+L +N  F   C   LF+S  ++ ++FT R + KKK
Sbjct: 57  YANTEVNQLQNNFPFNFGCTGSLFNSKSQNTKVFTRRVDNKKK 99


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 345,522,666
Number of Sequences: 1657284
Number of extensions: 6317734
Number of successful extensions: 15729
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15672
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)