Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0395
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   2.4  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    26   2.4  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   3.2  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   5.6  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    24   7.4  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    24   9.8  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.8  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 220 NKKRKEKETRCIKSLCLTIM*FVFKNVKDI 309
           N++ + K TR +KS CL  + F+FK   D+
Sbjct: 201 NEEAESKVTR-VKSSCLLTLSFLFKQTADL 229


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 309 YIFDILKHELHNCQTQRFNTSC--FFFF 232
           +IF +L   L N +T+RF   C  FFFF
Sbjct: 762 HIFFLLLSRLKNSRTERFVLRCTIFFFF 789


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 126 FSKLTNCIIISPSSTHVFNYLILYINR*EYLQQEEKRKRNTMY 254
           FS + N ++  PS+ HV+++L +      +  +     RNT+Y
Sbjct: 145 FSSVDNSLVKGPSNVHVYDHLFV-----RHWDRWNTGSRNTLY 182


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +2

Query: 134 INKLHHNISFIHSCLQLFDSVYKSLRIFTTRREKKKKHDVLN 259
           +NK   N+SF+ S  +++D +   ++ F   ++  K + +LN
Sbjct: 676 LNKAFSNVSFVPSLREVYDDLINVVQSFGF-KDLSKIYQILN 716


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 146 HHNISFIHSCLQLFDSVYKSLRIFTTRREK 235
           H  I F+   L  F+SVY++   F  + EK
Sbjct: 92  HSKIRFLRLDLLDFESVYQAAESFIAKEEK 121


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 128 FKINKLHHNISFIHSCLQL 184
           FK+ K H NI+ I SC QL
Sbjct: 49  FKVPKAHTNITGIISCDQL 67


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 70  YFYYFKREIIVLPYLYQYV 14
           Y Y+F    +  PYL++Y+
Sbjct: 82  YIYFFFYSFLCSPYLFKYI 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,582,305
Number of Sequences: 5004
Number of extensions: 31541
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)