Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0395
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1069 - 9493001-9493176,9493269-9493300,9493405-9493499,949...    27   4.1  
06_01_0225 - 1727461-1728825                                           27   7.2  

>07_01_1069 -
           9493001-9493176,9493269-9493300,9493405-9493499,
           9493623-9493898,9493976-9494039,9498048-9498113,
           9498283-9498413,9499722-9499859,9499964-9500079,
           9500166-9500331,9500435-9500548,9500609-9500692,
           9500995-9501073,9501134-9501337,9501999-9502096,
           9502187-9502284,9502359-9502495,9502606-9502824,
           9503541-9503743,9503856-9504005
          Length = 881

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 142 FVNFEKRVTNFCYLFLRYYGVCSCYFYYFK 53
           +V  E   TN   LF+ YYG C+ + Y+FK
Sbjct: 350 YVPIEVAGTNPVCLFISYYGCCAIW-YHFK 378


>06_01_0225 - 1727461-1728825
          Length = 454

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = -3

Query: 103 LFLRYYGVCSCYFYYFKREIIVL----PYLYQYVGY 8
           LF +YY V  CY Y+ +  +  L     Y YQ+  Y
Sbjct: 370 LFRQYYVVVICYIYFTRVVVYALMTITSYRYQWTSY 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,538,207
Number of Sequences: 37544
Number of extensions: 144980
Number of successful extensions: 335
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)