Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0395
         (396 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              34   0.036
SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)                       27   4.2  
SB_31740| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_27832| Best HMM Match : DUF1603 (HMM E-Value=5.3)                   27   7.3  
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          27   7.3  
SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)                27   7.3  

>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 34.3 bits (75), Expect = 0.036
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 112 FCYLFLRYYGVCSCYFYYFKREIIVLPYLYQYVGYCC 2
           +CY +  YY  C CY+Y +        Y Y Y  YCC
Sbjct: 471 YCYCYCYYYCYCYCYYYCYY-------YCYCYCYYCC 500


>SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)
          Length = 296

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -3

Query: 115 NFCYLFLRYYGVCSCYFYYFKREIIVLPYLYQYVGYC 5
           ++ Y +  YY     Y+YY+        Y Y Y  YC
Sbjct: 259 DYYYYYYYYYYYYYYYYYYYHYYYYYYYYYYYYYYYC 295



 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -3

Query: 106 YLFLRYYGVCSCYFYYFKREIIVLPYLYQYVGYCC 2
           Y +  YY     Y+YY+        Y Y Y  Y C
Sbjct: 261 YYYYYYYYYYYYYYYYYYHYYYYYYYYYYYYYYYC 295


>SB_31740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 288 HELHNCQTQRFNTSCFFF 235
           H  H C    +NTSCF F
Sbjct: 147 HRQHRCSADYYNTSCFGF 164


>SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -3

Query: 106 YLFLRYYGVCSCYFYYFKREIIVLPYLYQYVGYCC 2
           Y +  YY     Y+YY+        Y Y Y  YCC
Sbjct: 4   YYYYHYY----YYYYYYYYYYYYYYYYYYYYYYCC 34


>SB_27832| Best HMM Match : DUF1603 (HMM E-Value=5.3)
          Length = 215

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 265 TKI*YIVFLFLFSSCCKYSQRFIY 194
           T I YIVF F+ S+ C  S  FIY
Sbjct: 115 TLITYIVFAFISSASCILSNVFIY 138


>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -3

Query: 121 VTNFCYLFLRYYGVCSCYFYYFKREIIVLPYLYQYVGY 8
           +   C+ +  YY     Y+YY+ R+++  P    + G+
Sbjct: 517 IFTICHHYYYYYYYYYYYYYYYPRQVVRYPVNGHFHGH 554


>SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)
          Length = 1821

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +3

Query: 108  QKFVTRFSKLTNCIIISPSSTHVFNYLILYINR*EYLQQEEKRKRNTMY*IFVFD 272
            Q  + R   L   +++   +T V+  +  + +  ++ QQE   KR+T+Y +F+FD
Sbjct: 1543 QSMLMRTGVLQKLLVVPQETTSVYRAVKKWNSEEKWPQQE---KRSTIYRMFMFD 1594


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,703,117
Number of Sequences: 59808
Number of extensions: 197371
Number of successful extensions: 454
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)