Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0395
         (396 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24807.1 68414.m03108 anthranilate synthase beta subunit, put...    29   1.1  
At1g24735.1 68414.m03105 caffeoyl-CoA 3-O-methyltransferase, put...    29   1.1  
At2g02770.1 68415.m00220 COP1-interacting protein-related simila...    28   2.6  
At3g11470.2 68416.m01398 4'-phosphopantetheinyl transferase fami...    27   4.5  
At3g11470.1 68416.m01399 4'-phosphopantetheinyl transferase fami...    27   4.5  
At2g36380.1 68415.m04464 ABC transporter family protein related ...    26   7.9  

>At1g24807.1 68414.m03108 anthranilate synthase beta subunit,
           putative similar to anthranilate synthase beta chain
           GI:403434; similar to ESTs dbj|AV540153.1,
           dbj|AV557490.1, gb|AI997696.1, gb|AW004516.1,
           dbj|AV521371.1
          Length = 235

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 109 CYLFLRYYGVCSCYFYYFKREIIVLPYL 26
           CYLFL+Y G   C+F  ++ + + +  L
Sbjct: 44  CYLFLQYMGELQCHFEVYRNDELTVEEL 71


>At1g24735.1 68414.m03105 caffeoyl-CoA 3-O-methyltransferase,
           putative similar to SP|Q43237 [Vitis vinifera],
           GI:684942 [Medicago sativa subsp. sativa]
          Length = 195

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 125 FFKINKLHHNISFIHS-CLQLFDSV 196
           F K   +HH I+FIHS CLQ  D++
Sbjct: 73  FIKNAGVHHKINFIHSDCLQALDNM 97


>At2g02770.1 68415.m00220 COP1-interacting protein-related similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646, COP1-interacting protein 4.1
           (CIP4.1) [Arabidopsis thaliana] GI:13160650
          Length = 548

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 143 LHHNISFIHSCLQLFDSVYKSLRIFTTRREKKKKHDVLNL 262
           LH NIS   S +    +V+  + I     E+K KHDVL L
Sbjct: 429 LHFNISHTDSLISCGVTVHVPVGIDLEEMERKIKHDVLAL 468


>At3g11470.2 68416.m01398 4'-phosphopantetheinyl transferase family
           protein contains Pfam profile PF01648:
           4'-phosphopantetheinyl transferase superfamily
          Length = 236

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 143 LHHNISFIHSCLQLFDSVYKSLRIFTTRREKKKKHDVL 256
           LH NIS   S +    +V+  + I    +E+K KHD+L
Sbjct: 60  LHFNISHTDSLIACGVTVHVPVGIDVEDKERKIKHDIL 97


>At3g11470.1 68416.m01399 4'-phosphopantetheinyl transferase family
           protein contains Pfam profile PF01648:
           4'-phosphopantetheinyl transferase superfamily
          Length = 300

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 143 LHHNISFIHSCLQLFDSVYKSLRIFTTRREKKKKHDVL 256
           LH NIS   S +    +V+  + I    +E+K KHD+L
Sbjct: 124 LHFNISHTDSLIACGVTVHVPVGIDVEDKERKIKHDIL 161


>At2g36380.1 68415.m04464 ABC transporter family protein related to
            multi drug resistance proteins and P-glycoproteins
          Length = 1453

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -3

Query: 154  IMMQFVNFEKRVTNFCYLFLRYYGVCSCYFYYFKREIIVLPYLYQYVGYC 5
            I+   + ++  V  F + F  Y   C  YF  +   ++ L   YQ  G C
Sbjct: 1297 ILYSMIGYDWTVVKF-FWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGIC 1345


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,613,429
Number of Sequences: 28952
Number of extensions: 140151
Number of successful extensions: 296
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)