Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0394
         (684 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O18426 Cluster: Beta-gamma-crystallin; n=1; Geodia cydo...    34   2.8  
UniRef50_Q87GQ3 Cluster: Putative uncharacterized protein VPA126...    33   6.5  

>UniRef50_O18426 Cluster: Beta-gamma-crystallin; n=1; Geodia
           cydonium|Rep: Beta-gamma-crystallin - Geodia cydonium
           (Sponge)
          Length = 163

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -1

Query: 369 GKYL*YEQLNYTTHIASGKQSIM*KVNELGVLMNLNAVHRGFQPNFTFK-NETIKHHQNR 193
           G ++ Y+Q NY    ASG  S+  K++E   LM+L    R F+P  TF+   T+  H N 
Sbjct: 37  GMWIFYQQANYND--ASGGGSLWIKLDESSHLMDLPFTPRSFRPVKTFQVGATLYKHVNF 94

Query: 192 G 190
           G
Sbjct: 95  G 95


>UniRef50_Q87GQ3 Cluster: Putative uncharacterized protein VPA1262;
           n=2; Bacteria|Rep: Putative uncharacterized protein
           VPA1262 - Vibrio parahaemolyticus
          Length = 1104

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -1

Query: 339 YTTHIASGKQSIM*KVNELGVLMNLNAVH-RGFQPNFTFKNETIKHHQNRGLVESYKSSK 163
           YT  + + +QS++ +  +L +L +++       QP  T K   I+H++++GL+E   S  
Sbjct: 688 YTGSLYNKEQSVLSEQVKLALLEHISPSRANALQPRLTNKQLDIEHYRSQGLIELLLSKC 747

Query: 162 NRFESILFS 136
           + F +  +S
Sbjct: 748 DPFSTFTYS 756


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,260,446
Number of Sequences: 1657284
Number of extensions: 8329296
Number of successful extensions: 16288
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16286
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)