Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0394
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   4.4  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   4.4  

>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 297 KVNELGVLMNLNAVHRGFQPNFTFKNETIKHHQNRGLVESYKSSKN 160
           K+ E      L+ VHR   P    +  +I+H      VE YKS ++
Sbjct: 64  KIKEKYSTPRLSPVHRCALPTPRMRLTSIQHQLEEAAVEGYKSGES 109


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = -2

Query: 260 RSIAVFSQILHLKTKQLNTIRTEDWSKVINLQRIVLNQY 144
           ++++V SQ+L +K   +++ + E WSK  N  +I+LN Y
Sbjct: 88  QTLSVQSQLLKVKNS-IDSYKNE-WSKKTNDAQILLNSY 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,872
Number of Sequences: 5004
Number of extensions: 38577
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)