Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0394
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47887| Best HMM Match : PAN (HMM E-Value=4.1e-07)                   29   4.6  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_47887| Best HMM Match : PAN (HMM E-Value=4.1e-07)
          Length = 494

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 297 KVNELGVLMNLNAVHRGFQPNFTFKNETIKHHQNR-GLVESYKSSKNRFESILFSSQTKR 121
           K+ +LG L  L A    F P F F N  I+   ++  +V++ KS  N  +++ +  Q   
Sbjct: 379 KMLDLGNLGLLLASMLFFAPGFVFLNVGIRCQNHKVDVVDTAKSKNNGLQALSYCKQVDE 438

Query: 120 TL 115
           TL
Sbjct: 439 TL 440


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -1

Query: 231 TFKNETIKHHQNRGLVESYKSSKNRFESILFSSQTKR 121
           TFK + I+H ++  L+ ++  +K+  E ILF  Q+K+
Sbjct: 420 TFKEKYIEHPKDFELIAAFLENKSVSECILFYYQSKK 456


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,208,518
Number of Sequences: 59808
Number of extensions: 262739
Number of successful extensions: 549
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)