Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0394
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p...    31   0.71 
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p...    30   1.6  
At5g46380.1 68418.m05708 hypothetical protein                          28   5.0  
At3g59080.1 68416.m06586 aspartyl protease family protein contai...    28   5.0  

>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
           subunit, putative contains 5 WD-40 repeats (PF00400);
           similar to katanin p80 subunit (GI:3005601)
           [Strongylocentrotus purpuratus]
          Length = 1180

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +3

Query: 156 NDSLKIYNFRPILCSDGV 209
           +DSLK+Y++ P++C DGV
Sbjct: 246 DDSLKVYSWEPVVCHDGV 263


>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
           subunit, putative similar to contains 6 WD-40 repeats
           (PF00400); katanin p80 subunit (GI:3005601)
           [Strongylocentrotus purpuratus]
          Length = 974

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 156 NDSLKIYNFRPILCSDGV 209
           +D LK+Y++ P++C DGV
Sbjct: 195 DDGLKVYSWEPVICRDGV 212


>At5g46380.1 68418.m05708 hypothetical protein
          Length = 607

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
 Frame = -1

Query: 420 VEVNSDTHTSQRRHFKYGKYL*YE--QLNYTTHIASGKQSIM*KVNELGVL-MNLNAVHR 250
           V VNSD   S  ++ K+G++   E   +     +A   Q +    ++L    +NL     
Sbjct: 249 VPVNSDQCNSDLQNLKFGRFGSGEVHMIMNNQSLALPSQFLNDPADDLSFRHLNLRDEEE 308

Query: 249 GFQPNFTFKNETIKHHQNRGLVESYKSSKN 160
             QP     NE + +  N     +Y SS N
Sbjct: 309 EQQPRMNVANEKMAYEVNSNAARNYNSSPN 338


>At3g59080.1 68416.m06586 aspartyl protease family protein contains
           similarity to CND41, chloroplast nucleoid DNA binding
           protein (GI:2541876) [Nicotiana tabacum]; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 535

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -1

Query: 426 CCVEVNSDTHTSQRRHFKYGK-YL*YEQLNYTTHIASGKQSIM 301
           C V+ NSDT+ S +  F   K  L +  LN+T+ +A GK++++
Sbjct: 332 CLVDRNSDTNVSSKLIFGEDKDLLSHPNLNFTSFVA-GKENLV 373


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,241,688
Number of Sequences: 28952
Number of extensions: 184138
Number of successful extensions: 330
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)