Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0393
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.74 
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    28   1.3  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   2.3  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   3.0  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    26   4.0  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   4.0  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   9.1  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.1  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
 Frame = -1

Query: 603 TGNPVGSATSLSSSVTDNVRAQAEANQVDSTPLPPPLLMSQTKKLPRNCPTLGTPLTAV- 427
           T  PV S    +++ T +      +  V STPL      + T     + P   TPLT   
Sbjct: 436 TSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTN 495

Query: 426 LYRPLARPRQSTTITLQSETASKA 355
                + P  ST +T  + T S +
Sbjct: 496 CTTSTSVPYTSTPVTSSNYTISSS 519



 Score = 27.5 bits (58), Expect = 1.7
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
 Frame = -1

Query: 627 PHLAQPIQTGNPVGSATS--LSSSVTDNVRAQAEANQVDSTPLPPPLLMSQTKKLPRNCP 454
           P  + P+ T N   S +    S+ VT +    + +  V STP+      + T  L  + P
Sbjct: 485 PVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTP 544

Query: 453 TLGTPL-TAVLYRPLARPRQSTTITLQSETASKA 355
              TPL T       + P  ST +T  + T S +
Sbjct: 545 VTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSS 578


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -1

Query: 594 PVGSATSL---SSSVTDNVRAQAEANQVDSTPLPPPLLMSQTKKLPRNC 457
           P+ S+T+    S+S    +      N VDS+ LP P+ +S    LP +C
Sbjct: 273 PLPSSTNTYGPSNSYGYEININESTNHVDSSYLPHPIQLSNYFTLPSSC 321


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 405 VLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAMGSS 518
           VLPT   T  S    VS SSL++F    ST     GS+
Sbjct: 244 VLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGST 281


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 558 TDNVRAQAEANQVDSTPLPPPLLMSQTKKLPRNCPTL 448
           T NV A +   +   +P PPP+  S T   P + P+L
Sbjct: 403 TSNVPAYSTPARPTESPPPPPISSSSTTPRPDDKPSL 439


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 99  SKRIGLHLPHSDCCLQGSW 43
           S  +   LPHSD  L GSW
Sbjct: 290 SNSVSAKLPHSDSVLTGSW 308


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 163 LCQGTVQTTNTGFSPDVTKTTIKLLQMAMSTY 258
           LC  +VQ+ +T   PD+T + + +L ++   Y
Sbjct: 248 LCSNSVQSAHTNLQPDIT-SFVAILSLSHEAY 278


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 208 DVTKTTIKLLQMAMSTYPELELQWKPASLCYCPRLEQQRKLRCEHH 345
           D +    K ++   S   EL L+ +  S     +L +  ++ CEHH
Sbjct: 223 DASLNDTKEIEFVTSNKEELGLEGRDMSTSGINQLSRLARVECEHH 268


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 226  IKLLQMAMSTYPELELQWKPASLCYCPRLEQQRKLRC 336
            +K +++  S+YPEL+  W   +L +       R+L C
Sbjct: 1555 LKTIELLSSSYPELKQIWGEVALSWATTC-PSRRLAC 1590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,974
Number of Sequences: 5004
Number of extensions: 62047
Number of successful extensions: 244
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)