Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0393
(636 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064) 45 6e-05
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41) 39 0.004
SB_26408| Best HMM Match : Lipase (HMM E-Value=0) 38 0.005
SB_39797| Best HMM Match : VWA (HMM E-Value=6e-26) 29 0.007
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45) 31 0.78
SB_37296| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008) 30 1.8
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0) 29 2.4
SB_13183| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_208| Best HMM Match : zf-C2H2 (HMM E-Value=1.7) 29 4.2
SB_15037| Best HMM Match : zf-LSD1 (HMM E-Value=6.5) 29 4.2
SB_6592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_28019| Best HMM Match : KNOX2 (HMM E-Value=0.24) 28 5.5
SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05) 28 5.5
SB_20266| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_884| Best HMM Match : KNOX2 (HMM E-Value=0.24) 28 5.5
SB_40954| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11) 28 7.3
SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0) 28 7.3
SB_39747| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_28160| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_40963| Best HMM Match : Collagen (HMM E-Value=2.2e-09) 27 9.7
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_48920| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12) 27 9.7
SB_1697| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +2
Query: 257 IRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRPALLAVSDCNVIVVDWRGLANGLYNTAV 436
++ S Y+G FVI HG+ +G+++ +R ALL D NV++ DW A+G+Y A
Sbjct: 93 LKASTYDGKKRTFVIAHGYTESGSTSWVGHMRQALLQKDDVNVVITDWGPGADGMYWQAT 152
Query: 437 NGVPSVG 457
VG
Sbjct: 153 ANTRLVG 159
>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
Length = 131
Score = 44.8 bits (101), Expect = 6e-05
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +2
Query: 260 RNSN-YNGNLPLFVIVHGWNSNGNSAVNTMIRPALLAVSDCNVIVVDWRGLANG--LYNT 430
RNS + G+ L +I+HG+ +GN + ++R LL NVI VDW+ A+G LY+
Sbjct: 14 RNSTAFRGDRKLVLIIHGFMQSGNVSWIRVMRDELLKREPMNVITVDWQSGADGLNLYHV 73
Query: 431 AVNGVPSVGQFLGNFL 478
A VG L +
Sbjct: 74 AAGNTRVVGAQLAELI 89
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +1
Query: 514 RVHLIGFSLGAHVVGNAGRQAGGRPNRVT 600
RVHLIG SLGAHV G AG + G+ R+T
Sbjct: 102 RVHLIGHSLGAHVAGYAGERLSGKVGRIT 130
>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 3/33 (9%)
Frame = +1
Query: 520 HLIGFSLGAHVVGNAGR---QAGGRPNRVTGLD 609
+L+GFSLGAH+ G GR + G + NR+TGLD
Sbjct: 690 YLVGFSLGAHISGYVGRRIAKTGQKLNRITGLD 722
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/54 (37%), Positives = 24/54 (44%)
Frame = +2
Query: 347 IRPALLAVSDCNVIVVDWRGLANGLYNTAVNGVPSVGQFLGNFLVWLINNGGGN 508
IR AL+ D NVI DW A Y A VG + L+ +NN GN
Sbjct: 632 IRHALIKQEDANVITTDWSRGATIPYEQATANTRMVGAQITE-LIKFLNNQTGN 684
>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
Length = 291
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +1
Query: 502 RQWGRVHLIGFSLGAHVVGNAG---RQAGGRPNRVTGLD 609
R+ G H IGFSLGAH+ G G ++ G +R+TGLD
Sbjct: 168 REGGAFHSIGFSLGAHISGYVGQRLKRIGRHLDRITGLD 206
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 347 IRPALLAVSDCNVIVVDWRGLANGLYNTAVNGVPSVGQFLGNFLVWLINNGG 502
++ LL SD NVI+VDW A Y AV VG + F+ +++ G
Sbjct: 115 MKDELLRKSDDNVIIVDWIRGAKIPYVRAVANTRLVGAQVAAFMKTILSLSG 166
>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
Length = 714
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +1
Query: 469 QLFGLAHQQRRRQWGRVHLIGFSLGAHVVGNAGR---QAGGRPNRVTGLD 609
+L + ++ R+ VH+IGFS GAHV G GR + G +R+T LD
Sbjct: 175 RLLQILEERSGRKLAYVHVIGFSFGAHVAGYVGRRMKKRGRMIDRITALD 224
>SB_39797| Best HMM Match : VWA (HMM E-Value=6e-26)
Length = 317
Score = 28.7 bits (61), Expect(2) = 0.007
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -3
Query: 631 TTPPGPADPNR*PC 590
TTPPGP +P++ PC
Sbjct: 60 TTPPGPGEPDKKPC 73
Score = 28.3 bits (60), Expect(2) = 0.007
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 487 EPDQKVAKELSDTGNSIDGS-VV*TVGKTTPVHNNNVAVGDGQQGGADHGVHSGV 326
EPD+K KE D G ID S + + PV N VA Q + G H GV
Sbjct: 67 EPDKKPCKEAIDVGVIIDASESINNEQENFPVVLNFVANISKQYQVSQEGTHFGV 121
>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
Length = 825
Score = 31.1 bits (67), Expect = 0.78
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Frame = -1
Query: 633 LPPHLAQPIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTP-LP----PPLLMSQTKKL 469
LPP A + GN +A LS+ V+ + STP +P P +++Q +
Sbjct: 127 LPPPPAATARPGNQASTANPLSTPVSTTSTKATQGLLPSSTPEMPETAKPTTVVTQVTTM 186
Query: 468 PRNCPTLGTPLTAVLYRPLARPRQSTTITLQSETASK 358
P T TPLT+ R R +T +T Q T S+
Sbjct: 187 PN---TSVTPLTSPSTSVTQRTRPTTPVT-QEATPSQ 219
>SB_37296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = -3
Query: 376 VGDGQQGGADHGVHSGVSVAVPAVDNNKERQVSIVVRVPDRLTLPFVIT*WLF 218
VG GGA G VS A +N K R P +TL +V T WL+
Sbjct: 392 VGGAGVGGAGVGGAGVVSEVRHAAENRKHLLGVAFARAPADITLKYVATVWLY 444
>SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008)
Length = 832
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 88 DTFGCLMARVFLTSLTWXNRPRKTSLCQGTVQTTNTGFSPDVTKTTIKL 234
+T G L VF+ L +P K S Q T QTT T S + ++ + +
Sbjct: 641 ETGGVLANSVFVIRLGNSKQPHKASHSQTTAQTTQTSSSSEASQNSFSI 689
>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2418
Score = 29.5 bits (63), Expect = 2.4
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Frame = -3
Query: 487 EPDQKVAKELSDTGNSIDGSVV*TVGKTTPVHNNNVAVGDGQQ-----GGADHGV----- 338
+P Q + E+S+ N S+V TV T N + DG+ GG GV
Sbjct: 479 DPQQAIL-EISE--NLKQNSLVTTVSATDSDSVGNPSSPDGKVVYSIVGGTGLGVFRVDS 535
Query: 337 HSG-VSVAVPAVDNNKERQVSIVVRVPDRLTLP 242
++G V VAVP++D Q ++VV+ D T P
Sbjct: 536 NTGEVKVAVPSLDREGTSQYTLVVKASDNATFP 568
>SB_13183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 28 LAMLSP*SLETTVTMWKV*ADTFGCLMARVFLTSLTWXNRPRKTSLC 168
L+++ S + T+ ++ FGC A ++ + W +P + SLC
Sbjct: 87 LSLVGVASFQAPTTLTRLVLLAFGCGAAMLWFCGIVWSKKPSERSLC 133
>SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 523 LIGFSLGAHVVGNAGRQAGGRPNRVTGLDRLGQV 624
+IGFSLG HV G AG R TGL +LG++
Sbjct: 21 VIGFSLGGHVAG----YAGSRIKNTTGL-KLGRI 49
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/90 (25%), Positives = 35/90 (38%)
Frame = -1
Query: 630 PPHLAQPIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPLPPPLLMSQTKKLPRNCPT 451
P A P T P ++ +++ + ++TPLP +T LP+ T
Sbjct: 2929 PETTAVPKTTAAPETTSVPKTTAAPETTSVPKTTAAPETTPLPKTTAAPETTPLPK---T 2985
Query: 450 LGTPLTAVLYRPLARPRQSTTITLQSETAS 361
P T L + A P T TL TA+
Sbjct: 2986 TAAPETTTLPKTTAAPE---TTTLPKTTAA 3012
>SB_208| Best HMM Match : zf-C2H2 (HMM E-Value=1.7)
Length = 836
Score = 28.7 bits (61), Expect = 4.2
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = +1
Query: 172 GTVQTTN-TGFSPDVTKTTIKLLQMAMSTYPELELQWKPASLCYCPRLEQQRKLRC-EHH 345
G VQ N T + D+ K L M +S E +L A L + P + + C H
Sbjct: 22 GIVQCVNITNCTKDIKKHLRSLGVMDVSLDYEAKLLLARAGL-FDPEGKYTKVTICPSHR 80
Query: 346 DPPRLAGRLRLQRYCCGLAWSCQRS 420
D + R + CC L+WS RS
Sbjct: 81 DSHGIRWRSNRKNCCCPLSWSEHRS 105
>SB_15037| Best HMM Match : zf-LSD1 (HMM E-Value=6.5)
Length = 191
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 301 CPRLEQQRKLRCEHHDPPRLAGRLRLQ--RYCCGLAWSC 411
CP LR H PP GR+R+ R+C G+A C
Sbjct: 33 CPLTAIVLGLRASVHLPPLRCGRVRVSTYRHCVGVACEC 71
>SB_6592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Frame = -1
Query: 585 SATSLSSSVTDNVRAQAEANQVDSTPLPPPLLMSQTKKLPRNCPTLGTPLTAVLYRPLAR 406
S + +++ + A A N T PPPLL K L L ++ YRP
Sbjct: 193 SLQGMEPTLSSDHPALALENSQSKTEEPPPLLSEGAPKDAEVSLRLSEELPSIEYRPSGT 252
Query: 405 PRQSTTITLQS-ETASKAGRI 346
P +QS T + G I
Sbjct: 253 PEGVAAPDVQSTPTVASTGNI 273
>SB_28019| Best HMM Match : KNOX2 (HMM E-Value=0.24)
Length = 318
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +3
Query: 12 LIALSSGNAIPMIPGDNSHYVEGVSRYVWMP 104
+ A+ S ++IP + + Y++ +SR++W+P
Sbjct: 223 IYAMGSFSSIPKVCRQFTDYLQAISRFLWVP 253
>SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05)
Length = 449
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +1
Query: 376 LQRYCCGLAWSCQRSIQHCRQWSSQCRTVPWQLFGLAHQQR---RRQWGRVHLIGFSL 540
L R C C + +C QW + PW+ AH+Q R G H IGFS+
Sbjct: 331 LSRRCAEWGNLCNGAT-NCDQWGNTAFDGPWRT---AHRQAYFTNRATGETHTIGFSV 384
>SB_20266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 28.3 bits (60), Expect = 5.5
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Frame = -1
Query: 612 PIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPLPPPLLMSQTKKL-PRNC--PTLGT 442
P + N + T + T RAQ +PPP + +TK++ PR T T
Sbjct: 70 PAEKKNASENFTKRYAKCTQRPRAQKHVRTTHPVVIPPPTVRERTKRINPRFALSRTRRT 129
Query: 441 PLTAVLY-RPLAR---PRQSTTITLQSETASKA 355
P V RP R P IT Q+ET+ KA
Sbjct: 130 PRPDVYQSRPSQRRQLPSYQHLIT-QTETSRKA 161
>SB_884| Best HMM Match : KNOX2 (HMM E-Value=0.24)
Length = 233
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +3
Query: 12 LIALSSGNAIPMIPGDNSHYVEGVSRYVWMP 104
+ A+ S ++IP + + Y++ +SR++W+P
Sbjct: 195 IYAMGSFSSIPKVCRQFTDYLQAISRFLWVP 225
>SB_40954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 28.3 bits (60), Expect = 5.5
Identities = 24/93 (25%), Positives = 37/93 (39%)
Frame = -1
Query: 636 LLPPHLAQPIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPLPPPLLMSQTKKLPRNC 457
LL + Q Q V + + SSS + + E++ + PP K +
Sbjct: 131 LLDVAIGQLNQYTQMVNAQSQASSSTSTQTNSSTESSAAKTKGEKPPAKPKDAPKSTSDW 190
Query: 456 PTLGTPLTAVLYRPLARPRQSTTITLQSETASK 358
P+L +P +P+A STT T S SK
Sbjct: 191 PSLTSP----AIQPVAPATPSTTTTAPSTADSK 219
>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
Length = 1012
Score = 27.9 bits (59), Expect = 7.3
Identities = 32/124 (25%), Positives = 44/124 (35%), Gaps = 5/124 (4%)
Frame = -1
Query: 618 AQPIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPLPPPLLMSQTKKLPRNCPTLGTP 439
A I T NP GS ++ + SVT + + TP P + + PT TP
Sbjct: 892 APEITTANP-GSPSTTTKSVT----TPQTSPKTPQTPATLPTTQTPEPGTEKTMPTTATP 946
Query: 438 LTAVLYRPLARPRQSTTITLQSETASKAGRI--MVFTAEFPLLFQP---WTITKRGRFPL 274
T PL S T Q G I ++F F L+ W K+ P
Sbjct: 947 GTGQPTTPLTTSVPSDRSTEQQGEGLSGGSIGGIIFAVIFLLVIMAAVIWYYRKKSLPPA 1006
Query: 273 *FEF 262
F +
Sbjct: 1007 SFRY 1010
>SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0)
Length = 584
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 516 STPLPPPLLMSQTKKLP 466
STPLPPPLL + T P
Sbjct: 315 STPLPPPLLSNSTSSKP 331
>SB_39747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -1
Query: 483 QTKKLPRNCPTLGTPLTAVLYRPLARPRQS-TTITLQSET-ASKAGRIMV 340
Q LPRN P L + T V R +RP TT++ S T S+AG I V
Sbjct: 67 QRTSLPRNRPLLPSRETPVQKRNPSRPISGRTTVSALSRTPGSRAGGITV 116
>SB_28160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 573 LSSSVTDNVRAQAEANQVDSTPLPPPLLMSQTKK 472
++ + D++ +AN+VD+T PPP+ KK
Sbjct: 133 VTGTSVDHLSTLPKANRVDATRTPPPISEDDAKK 166
>SB_40963| Best HMM Match : Collagen (HMM E-Value=2.2e-09)
Length = 234
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -3
Query: 376 VGDGQQGGADHGVHSGVSVAVPAVDNNKERQVSIVVRVPDRLTLP 242
+GDG GGA HG G AV + + +KE + V + D++ LP
Sbjct: 79 LGDGGFGGASHG---GEMAAVQSEEQHKEAIIEASV-LFDKIVLP 119
>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1257
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +1
Query: 190 NTGFSPDVTKTTIKLLQMAMSTYPELELQWKPASLCYCPRLEQQRKLRCEHHDPPRLAGR 369
NT +SP + + ++ +S YP L W+ L Y RC+ H P
Sbjct: 1040 NTAYSPRRQALVLHIKKILLSVYPFLHCVWESTFLGY---QMLYMFSRCDSHSPLVHWIG 1096
Query: 370 LRLQR 384
L+LQR
Sbjct: 1097 LKLQR 1101
>SB_48920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/35 (51%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -1
Query: 501 PPLLMSQTKKL---PRNCPTLGTPLTAVLYRPLAR 406
PPL + KL PR CPT G PL VL RP R
Sbjct: 21 PPLEVDGIDKLDAMPRKCPTPGDPL--VLERPPPR 53
>SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)
Length = 1225
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 453 SDSSLATFWSGSSTTEAAMGSSPLDW 530
S S +FW G S TEA +G++ W
Sbjct: 379 SKSEARSFWQGVSETEALLGTNEKIW 404
>SB_1697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 647
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 100 CLMARVFLTSLTWXNRPRKTSLCQGTVQTTNTG 198
C M V + L W + P KT + G++ T+ TG
Sbjct: 248 CAMGAVSKSVLPWCHPPNKTIVGSGSIVTSVTG 280
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,317,258
Number of Sequences: 59808
Number of extensions: 551991
Number of successful extensions: 1877
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1872
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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