Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0393
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    28   0.087
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   5.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.9 bits (59), Expect = 0.087
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 456 PTLGTPLTAVLYRPLARPRQST 391
           P +GTP T ++Y+P   P Q++
Sbjct: 847 PVIGTPSTGMMYKPFLIPEQTS 868


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 406  TTPVHNNNVAVGDGQQGGAD 347
            + P +N +   GDG++GGA+
Sbjct: 1052 SNPSYNFSSVSGDGEEGGAE 1071



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 528  NQVDSTPLPPPLLMSQTKKLP 466
            NQV S PL  PLL    + +P
Sbjct: 1091 NQVGSGPLSEPLLTQTMEDVP 1111


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 406  TTPVHNNNVAVGDGQQGGAD 347
            + P +N +   GDG++GGA+
Sbjct: 1048 SNPSYNFSSVSGDGEEGGAE 1067



 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 528  NQVDSTPLPPPLLMSQTKKLP 466
            NQV S PL  PLL    + +P
Sbjct: 1087 NQVGSGPLSEPLLTQTMEDVP 1107


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +3

Query: 168 SRNGANNQYWLFTRRNQNNHQVITNGNVNL 257
           + N  NN Y  +   N NN++ +    +N+
Sbjct: 330 NNNNYNNNYNNYNNNNYNNYKKLYYNIINI 359


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 557 VTLDDRLVADPTGLPVW 607
           +TLDD++   P   P+W
Sbjct: 643 MTLDDKVFGFPLDRPMW 659


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 557 VTLDDRLVADPTGLPVW 607
           +TLDD++   P   P+W
Sbjct: 643 MTLDDKVFGFPLDRPMW 659


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,243
Number of Sequences: 438
Number of extensions: 5256
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)