Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0393
(636 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40970.1 68415.m05060 myb family transcription factor contain... 36 0.030
At1g59940.1 68414.m06752 two-component responsive regulator / re... 31 0.48
At2g37925.1 68415.m04655 copper transporter family protein simil... 31 0.85
At5g45500.1 68418.m05589 expressed protein weak similarity to re... 30 1.1
At3g20460.1 68416.m02590 sugar transporter, putative similar to ... 29 2.6
At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein ... 29 2.6
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 29 3.4
At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) severa... 28 4.5
At3g20770.1 68416.m02627 ethylene-insensitive 3 (EIN3) identical... 28 6.0
At2g33790.1 68415.m04144 pollen Ole e 1 allergen and extensin fa... 28 6.0
At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to simi... 28 6.0
At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to simi... 28 6.0
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138... 27 7.9
At1g51100.1 68414.m05745 expressed protein 27 7.9
>At2g40970.1 68415.m05060 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 248
Score = 35.5 bits (78), Expect = 0.030
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 636 LLPPHLAQPIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPLPPPLLMS 484
L+ PHLA Q G+P S ++ + + Q+ TP PPP++M+
Sbjct: 29 LITPHLALAFQIGSPNHHLGSKRTTAIYHQKLQSSTTPTTPTPTPPPMMMN 79
>At1g59940.1 68414.m06752 two-component responsive regulator /
response regulator 3 (ARR3) identical to response
regulator 3 GI:3953595 from [Arabidopsis thaliana]
Length = 231
Score = 31.5 bits (68), Expect = 0.48
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 573 LSSSVTDNVRAQAEANQVDSTPLPPPLLMSQTKKLPRNCPTLGTPLTAV 427
L S +T +V+ AE N+ T PPP +S T + + T+ +PL+ V
Sbjct: 156 LRSYLTRDVKVAAEGNKRKLTTPPPPPPLSATSSMESSDSTVESPLSMV 204
>At2g37925.1 68415.m04655 copper transporter family protein similar
to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family; supporting cDNA
gi|18496855|gb|AF466372.1|
Length = 145
Score = 30.7 bits (66), Expect = 0.85
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +2
Query: 296 VIVHGWNSNGNSAVNTMIRPALLAVS-----DCNVIVVDWRGLANGLYNTAV 436
V+V WN+ + T RP+LL + +C V+ W G G+Y A+
Sbjct: 8 VVVEAWNTTTTTQTQTPHRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALAL 59
>At5g45500.1 68418.m05589 expressed protein weak similarity to
resistance complex protein I2C-2 [Lycopersicon
esculentum] GI:2258317
Length = 489
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 169 QGTVQTTNTGFSPDVTKTTIKLLQMAMSTYPELELQWKPASLCYCPRLEQQRKLRC 336
+G ++ T G S + K+ + + P+L+++W+ S Y P L+ K +C
Sbjct: 412 KGGIKLTGFGKSLPSQNSKCKVTVLRLKFLPKLKVEWRDLSKRYFPELKFLEKYQC 467
>At3g20460.1 68416.m02590 sugar transporter, putative similar to
ERD6 protein [Arabidopsis thaliana] GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 488
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +2
Query: 329 SAVNTMIRPALLAVSDCNVIVVDWRGLANGLYNTAVNGVPSVGQFLGNFLV-----WLIN 493
SA+N+++ A +AV+ V+ W+ LA ++ VP V +F+G F + WL
Sbjct: 181 SAINSLVMCASVAVTYLLGSVISWQKLA------LISTVPCVFEFVGLFFIPESPRWLSR 234
Query: 494 NG 499
NG
Sbjct: 235 NG 236
>At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 214
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 636 LLPPHLAQPIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPLP 502
L PH PI NP S++S SS+ T ++ + +TP P
Sbjct: 85 LFEPHHHTPIANPNPNFSSSSSSSTTTAHLEPSLTNQRSKTTPFP 129
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 372 PTATLLLWTGVVLPTVYTTLPSMEFPVSDSSLATFWSGSSTTEAAMGSSPLDW 530
P LL G+VLP +Y TL ++ F + + G + AAM S W
Sbjct: 166 PLTRFLLAQGLVLPLLYCTLTTLLFHIPVCWAFVYAFGLGSNGAAMAISVSFW 218
>At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) several
homeodomain proteins;
Length = 575
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 394 HNNNVAVGDGQQGGADHGVHSGV-SVAVPAVDNNKERQVSIVVRVPDRLTLP 242
+NNN V G GG+ G G+ S VP ++++ VS+ + + ++ LP
Sbjct: 475 NNNNSYVNSGSGGGSAVGFSYGIGSSNVPVMNSSTNGGVSLTLGLHHQIGLP 526
>At3g20770.1 68416.m02627 ethylene-insensitive 3 (EIN3) identical to
ethylene-insensitive3 GI:2224933 from [Arabidopsis
thaliana]
Length = 628
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/51 (25%), Positives = 20/51 (39%)
Frame = +3
Query: 117 VPHLVDLEXPAEEDILMSRNGANNQYWLFTRRNQNNHQVITNGNVNLSGTR 269
+P+ + + N NN + F + NN + N N N SG R
Sbjct: 534 IPNRANNNNSSNNQTFFQGNNNNNNVFKFDTADHNNFEAAHNNNNNSSGNR 584
>At2g33790.1 68415.m04144 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245, SP|Q03211 Pistil-specific
extensin-like protein precursor (PELP) {Nicotiana
tabacum}; contains Pfam profile PF01190: Pollen proteins
Ole e I family
Length = 239
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -2
Query: 626 PTWPSRSKPVTLLGLPPACRPALPTTCAPKLKPIK 522
PT P P+ L PPA P T P PIK
Sbjct: 51 PTLPPAKAPIKLPAYPPAKAPIKLPTLPPAKAPIK 85
>At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 370
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 215 PKQPSSYYK--WQCQPIRNSNYNG 280
PK P+S YK W+ + I+N NY G
Sbjct: 220 PKIPNSAYKGPWKAKRIKNPNYKG 243
>At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 424
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 215 PKQPSSYYK--WQCQPIRNSNYNG 280
PK P+S YK W+ + I+N NY G
Sbjct: 274 PKIPNSAYKGPWKAKRIKNPNYKG 297
>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 579
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = -1
Query: 492 LMSQTKKLPRNCPTLGTPLTAVLYRPLARPRQSTTITLQSETASKAGRIMVFTAEFPLLF 313
+ S +KL CP +T +L R L PR + E + T+EFP L+
Sbjct: 397 MTSNERKLAGLCPLNAKEVTRLL-RALGAPRDARIYWAGGEPLGGKEALKPLTSEFPHLY 455
Query: 312 QPWTI 298
+ I
Sbjct: 456 NKYDI 460
>At1g51100.1 68414.m05745 expressed protein
Length = 211
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -1
Query: 624 HLAQPIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPLPPPLLMSQTKKLP 466
H+A PI+T + V T S+ + N +++ ++ TP P + + +K P
Sbjct: 18 HIAVPIRTNSFVRRTTKFSTKCSSN--PESKDQFINLTPAPESINTTSAEKFP 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,133,038
Number of Sequences: 28952
Number of extensions: 372178
Number of successful extensions: 1425
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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