Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0392
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 120 2e-28
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 95 1e-20
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 95 1e-20
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 79 5e-16
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 71 2e-13
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 50 5e-07
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 42 1e-04
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 40 5e-04
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 39 7e-04
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 39 0.001
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 36 0.007
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 35 0.015
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 34 0.020
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 34 0.027
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 33 0.046
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 32 0.11
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 29 0.57
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 29 1.00
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 28 1.7
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 27 2.3
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 5.3
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 7.0
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo... 26 7.0
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 9.3
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 120 bits (290), Expect = 2e-28
Identities = 54/76 (71%), Positives = 61/76 (80%)
Frame = +1
Query: 502 QGMQQKATKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKHYKRIL 681
Q M K TKD SGGWRMR+AL+RAL++KP LLLLDEPTNHLDL+ VWLE L Y +IL
Sbjct: 211 QEMMAKPTKDMSGGWRMRVALSRALFIKPSLLLLDEPTNHLDLEAVVWLENYLAKYDKIL 270
Query: 682 VLISHSQDFLNGVCTN 729
V+ SHSQDFLN VCTN
Sbjct: 271 VVTSHSQDFLNNVCTN 286
Score = 70.1 bits (164), Expect = 3e-13
Identities = 31/68 (45%), Positives = 49/68 (72%)
Frame = +3
Query: 54 RSCTGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAA 233
RS +G L P SRDIKI +++++F+G L+++ +ELN G+RYGL+G NG GKS+ L +
Sbjct: 61 RSASGVLTSQPMSRDIKIDSYTLSFHGRLLIENATIELNHGQRYGLLGDNGSGKSTFLES 120
Query: 234 LGRREVPF 257
+ R+V +
Sbjct: 121 VAARDVEY 128
Score = 66.1 bits (154), Expect = 5e-12
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Frame = +2
Query: 254 FPEHIDIFHLTREMPASDKTALQCVMEVDEERV-KLEKLAEMLAHCEDDESQEQLMDVYD 430
+PEHID + L E SD A+ +++ +++V KLE E L+ DD L Y+
Sbjct: 128 YPEHIDSYLLNAEAEPSDVNAVDYIIQSAKDKVQKLEAEIEELSTA-DDVDDVLLESKYE 186
Query: 431 RLDDLSADTAEARAANILHGLGFTKECSRRQRK 529
LDD+ T EA+AA ILHGLGFT+E + K
Sbjct: 187 ELDDMDPSTFEAKAAMILHGLGFTQEMMAKPTK 219
Score = 48.8 bits (111), Expect = 9e-07
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +1
Query: 490 SWLHQGMQQKATKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKHY 669
S LHQ + + D G + R+ A +PH+LLLDEPTNHLD+ + L + + +
Sbjct: 502 SGLHQTSEIRTLSD---GLKSRVVFAALALEQPHILLLDEPTNHLDITSIDALAKAINVW 558
Query: 670 KRILVLISH 696
+VL+SH
Sbjct: 559 TGGVVLVSH 567
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 141 LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPFR-NTLTYS 278
L +D ++ R +VG NG GKS+LL + +P N YS
Sbjct: 405 LYRDLSFGIDMDSRVAIVGKNGTGKSTLLNLITGLLIPIEGNVSRYS 451
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 94.7 bits (225), Expect = 1e-20
Identities = 43/76 (56%), Positives = 58/76 (76%)
Frame = +1
Query: 502 QGMQQKATKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKHYKRIL 681
Q MQ ATK FSGGWRMR++LARAL+ +P LLLLDEP+N LD+ + +L E L+ YK I+
Sbjct: 345 QEMQSHATKTFSGGWRMRLSLARALFCQPDLLLLDEPSNMLDVPSIAFLSEYLQTYKNIV 404
Query: 682 VLISHSQDFLNGVCTN 729
+++SH + FLN V T+
Sbjct: 405 LVVSHDRSFLNEVATD 420
Score = 64.1 bits (149), Expect = 2e-11
Identities = 28/65 (43%), Positives = 43/65 (66%)
Frame = +1
Query: 535 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKHYKRILVLISHSQDFLN 714
SGG + R+A A PH+L+LDEPTNHLD+++ L +K ++ ++L+SH DFL+
Sbjct: 638 SGGQKSRVAFACLGLQNPHILILDEPTNHLDMESMDALTRAVKRFQGGVILVSHDVDFLD 697
Query: 715 GVCTN 729
CT+
Sbjct: 698 KTCTS 702
Score = 60.1 bits (139), Expect = 4e-10
Identities = 30/62 (48%), Positives = 37/62 (59%)
Frame = +3
Query: 87 RSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPFRNT 266
+S+DIKI + F G +L L L GRRYGL G NG GKS+LL AL RRE+
Sbjct: 179 KSKDIKIDGIDLAFAGHRILTGASLTLAQGRRYGLTGRNGIGKSTLLRALSRREIAIPTH 238
Query: 267 LT 272
+T
Sbjct: 239 IT 240
Score = 53.2 bits (122), Expect = 4e-08
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 27/121 (22%)
Frame = +2
Query: 251 SFPEHIDIFHLTREMPASDKTALQCVMEVD---------EERVK-----LEKLAEMLA-- 382
+ P HI I H+ +EM D ALQ V++ D +E++ +EK E L+
Sbjct: 234 AIPTHITILHVEQEMTGDDTPALQSVLDADVWRKYLIQDQEKITNRLSTIEKELEELSKD 293
Query: 383 -----------HCEDDESQEQLMDVYDRLDDLSADTAEARAANILHGLGFTKECSRRQRK 529
E DE +L+D+ ++L ++ +D AE+RAA IL GLGFT+E K
Sbjct: 294 QTADQAISRRLERERDELDLRLLDIQNKLSEMDSDRAESRAATILAGLGFTQEMQSHATK 353
Query: 530 T 532
T
Sbjct: 354 T 354
Score = 29.1 bits (62), Expect = 0.76
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 132 GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAAL 236
G +L+ +++ R G+VG NG GKS++L L
Sbjct: 530 GHPILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLL 564
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 94.7 bits (225), Expect = 1e-20
Identities = 44/76 (57%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
Frame = +1
Query: 508 MQQKATKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKHYK--RIL 681
M K T + SGGWRMRIALAR L++KP L++LDEPTNHLDL+ WLEE L H L
Sbjct: 413 MIAKRTNELSGGWRMRIALARILFIKPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHTL 472
Query: 682 VLISHSQDFLNGVCTN 729
++ H+QD LN VCT+
Sbjct: 473 LITCHTQDTLNEVCTD 488
Score = 61.3 bits (142), Expect = 2e-10
Identities = 30/86 (34%), Positives = 52/86 (60%)
Frame = +3
Query: 18 KLEAEAKMNSEARSCTGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVG 197
K+ + ++ + TG+L P SRD+++ S++ +G L++D+ L L GRRYGL+
Sbjct: 249 KVAPDGSNPADGITVTGNLLSPPNSRDLQVEKLSVSAWGKLLIKDSELNLINGRRYGLIA 308
Query: 198 LNGCGKSSLLAALGRREVPFRNTLTY 275
NG GKS+LL A+ +P ++L +
Sbjct: 309 PNGSGKSTLLHAIACGLIPTPSSLDF 334
Score = 48.0 bits (109), Expect = 2e-06
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = +1
Query: 535 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKHYKRILVLISH 696
S G R R+ A +PH+LLLDEPTN LD+DT L + L ++ +V I+H
Sbjct: 714 SDGQRRRVLFAFLGMTQPHILLLDEPTNALDIDTIDALADALNNFDGGVVFITH 767
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 99 IKIANFSITFYGSELLQDTL-LELNCGRRYGLVGLNGCGKSSLLAALGRREVP 254
IK + S + G + L L+ R LVG NG GK++L+ + + P
Sbjct: 594 IKFQDVSFNYPGGPTIFSKLNFGLDLKSRVALVGPNGAGKTTLIKLILEKVQP 646
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 79.4 bits (187), Expect = 5e-16
Identities = 38/75 (50%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = +1
Query: 508 MQQKATKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKHYKRILVL 687
MQ+ SGGW+M++ LARA+ K +LLLDEPTNHLD+ WLE L K I L
Sbjct: 555 MQENPVASLSGGWKMKLELARAMLQKADILLLDEPTNHLDVANIAWLEAYLTSQKNITCL 614
Query: 688 I-SHSQDFLNGVCTN 729
I SH FL+ VCT+
Sbjct: 615 IVSHDSSFLDHVCTD 629
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/63 (38%), Positives = 43/63 (68%)
Frame = +1
Query: 535 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKHYKRILVLISHSQDFLN 714
SGG ++++ +A L+ P LL+LDEPTN LD D L ++ ++ +V+ISH+++F++
Sbjct: 912 SGGQKVKVVIAACLWNNPQLLVLDEPTNFLDRDALGGLAVAIRDWEGGVVMISHNEEFVS 971
Query: 715 GVC 723
+C
Sbjct: 972 ALC 974
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +3
Query: 111 NFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREV 251
+FS+ + G LL T L L G RYG+VG NGCGKS+LL A+G +V
Sbjct: 449 DFSLAYGGRLLLSHTNLHLYRGHRYGVVGHNGCGKSTLLRAIGDYKV 495
Score = 29.1 bits (62), Expect = 0.76
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 99 IKIANFSITFYGSEL--LQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP 254
+K+ N S T+ ++ L + + L+ R ++G NG GKS+L+ L +P
Sbjct: 692 LKMTNASYTYPNAKKKSLDNVTVGLSLSSRVAILGPNGAGKSTLIKVLIGEVIP 745
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 70.9 bits (166), Expect = 2e-13
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +1
Query: 535 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKHYKRI-LVLISHSQDFL 711
SGGW+M++AL RA++ P +LLLDEPTNHLD+ WLE L + K + +++SH FL
Sbjct: 550 SGGWKMKLALTRAMFKNPDILLLDEPTNHLDVVNVAWLENFLVNQKDVSSIIVSHDSGFL 609
Query: 712 NGV 720
+ V
Sbjct: 610 DHV 612
Score = 62.9 bits (146), Expect = 5e-11
Identities = 26/65 (40%), Positives = 47/65 (72%)
Frame = +1
Query: 526 KDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKHYKRILVLISHSQD 705
K SGG ++++ LA +++PH+++LDEPTN+LD D+ L + LK++ +VL++HS++
Sbjct: 902 KGLSGGQKVKLVLAACTWLRPHVIVLDEPTNYLDRDSLGALSKGLKNFGGGVVLVTHSRE 961
Query: 706 FLNGV 720
F G+
Sbjct: 962 FTEGL 966
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/52 (44%), Positives = 30/52 (57%)
Frame = +3
Query: 96 DIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREV 251
D+ FS+ + LL T L L GRRYGL G NG GKS+L+ A+ +V
Sbjct: 434 DLCNCEFSLAYGAKILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAIVNGQV 485
Score = 30.3 bits (65), Expect = 0.33
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 99 IKIANFSITFYGSEL--LQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP 254
IK+ + S + G+ L D +++ R ++G NG GKS+L+ L +P
Sbjct: 673 IKVQHMSFQYPGTSKPQLNDISFQVSLSSRIAVIGPNGAGKSTLIKVLTGELLP 726
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 49.6 bits (113), Expect = 5e-07
Identities = 24/63 (38%), Positives = 40/63 (63%)
Frame = +1
Query: 523 TKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKHYKRILVLISHSQ 702
+K+FSGG R+A ARAL P LL+LDE T+ LD + + LE+ +++ +++I+H
Sbjct: 1233 SKNFSGGQIQRLAFARALLRNPRLLILDECTSALDSKSSLLLEKTIQNLSCTVLIITHQP 1292
Query: 703 DFL 711
+
Sbjct: 1293 SLM 1295
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Frame = +1
Query: 535 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKHYK--RILVLISHSQDF 708
SGG + RIALARAL +L+LDEPT+ LD T + + ++ ++ + ++I+H
Sbjct: 572 SGGQQQRIALARALLRDTEILILDEPTSALDPITKNLVMDAIRAHRKGKTTLVITHDMSQ 631
Query: 709 LN 714
+N
Sbjct: 632 IN 633
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Frame = +1
Query: 535 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKH--YKRILVLISH 696
SGG + RIA+ARA+ P +LLLDE T+ LD + V +++ L + R ++I+H
Sbjct: 569 SGGQKQRIAIARAVISDPKILLLDEATSALDSKSEVLVQKALDNASRSRTTIVIAH 624
Score = 40.3 bits (90), Expect = 3e-04
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +1
Query: 535 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELK--HYKRILVLISH 696
SGG + RIA+ARAL P +LLLDE T+ LD + ++E L R V I+H
Sbjct: 1260 SGGQKQRIAIARALIRNPKILLLDEATSALDSHSEKVVQEALNAASQGRTTVAIAH 1315
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +1
Query: 535 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKHYK--RILVLISH 696
SGG + R+A+ARA+ P ++LLDE T+ LD +T ++ L R ++I+H
Sbjct: 722 SGGEKQRVAVARAILKDPSIILLDEATSALDTNTERQIQAALNRLASGRTAIVIAH 777
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 39.1 bits (87), Expect = 7e-04
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = +1
Query: 535 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKH----YKRILVLISHS 699
SGG + RIALARA+Y ++L+D+ + LD+ T W+ + R ++L++H+
Sbjct: 741 SGGQKQRIALARAVYSPTSIVLMDDVFSALDIHTSNWIYKHCFQSSLMENRTVILVTHN 799
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 529 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 627
+FS G + +ALARA+ + +++LDE T +D
Sbjct: 1355 NFSQGQKQVLALARAIVRRSKIIILDECTASVD 1387
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = +1
Query: 535 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELK 663
SGG + RIA+ARAL P L+LDE T+ LD + V +++ ++
Sbjct: 621 SGGQKQRIAIARALLRNPAFLILDEATSALDGEAEVMVDKTIQ 663
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 35.9 bits (79), Expect = 0.007
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +1
Query: 490 SWLHQGMQQKATK---DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEEL 660
S L G+ + + +FS G R I LAR L +LLLDE T + +T +++ +
Sbjct: 1346 SQLEDGLYSRVAEGGANFSSGQRQLICLARVLLTSTRILLLDEATASVHAETDAIVQQTI 1405
Query: 661 -KHYK-RILVLISH 696
K +K R ++ ++H
Sbjct: 1406 RKRFKDRTILTVAH 1419
Score = 32.7 bits (71), Expect = 0.061
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 466 ACC*YPAWSWLHQGMQQKATK---DFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 627
ACC + +G Q + + SGG + RI+LARA+Y + + LLD+ + +D
Sbjct: 679 ACCLKRDFEIFTEGDQTEVGQKGASLSGGQKSRISLARAIYSQADIYLLDDVLSSVD 735
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 144 LQDTLLELNCGRRYGLVGLNGCGKSSLLAALGR 242
L + +E++ + G+VG G GKS+L AL R
Sbjct: 1243 LNNINIEISPREKIGIVGRTGAGKSTLAMALFR 1275
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 34.7 bits (76), Expect = 0.015
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Frame = +1
Query: 529 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELK-HYKRILVL-ISH 696
+FS G R +ALARAL K +++LDE T +D T +++ L+ +K VL I+H
Sbjct: 1324 NFSSGQRQILALARALVRKSRIVILDESTASVDDTTDRRIQQMLRAAFKHATVLCIAH 1381
Score = 32.3 bits (70), Expect = 0.081
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 535 SGGWRMRIALARALYVKPHLLLLDEPTNHLDLDT 636
SGG + R++LARALY + + D+ + LD+ T
Sbjct: 708 SGGQKQRVSLARALYSNAEVYIFDDIFSALDVST 741
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 34.3 bits (75), Expect = 0.020
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 99 IKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLA 230
I + + + ++G ++L D + G R+ L G NG GK++LLA
Sbjct: 265 ISMEHLNCVYWGRKVLSDINWTIREGERWALTGSNGSGKTTLLA 308
Score = 30.3 bits (65), Expect = 0.33
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 529 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 630
+ S G R LA L +P LLLLDEP LD+
Sbjct: 148 NLSNGQSRRAMLASKLVQRPQLLLLDEPYAGLDV 181
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 33.9 bits (74), Expect = 0.027
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 96 DIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREV 251
++ ++N S TF + L L+L G R LVG NG GKS+LL L + +
Sbjct: 2 EVTVSNLSYTFSPKQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSL 55
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 33.1 bits (72), Expect = 0.046
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 466 ACC*YPAWSWLHQGMQQKATK---DFSGGWRMRIALARALYVKPHLLLLDEPTNHLD 627
ACC + L G Q + + SGG + RI+LARA+Y + + LLD+ + +D
Sbjct: 681 ACCLLRDFEILADGDQTEVGEKGISLSGGQKARISLARAVYSRSDIYLLDDILSAVD 737
Score = 32.3 bits (70), Expect = 0.081
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = +1
Query: 496 LHQGMQQKATK---DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKH 666
L G+ + T+ + S G R + L RAL +LLLDE T +D++T ++ ++
Sbjct: 1346 LDGGLYSRVTEGGANLSSGQRQLMCLTRALLTPTRVLLLDEATAAVDVETDAIVQRTIRE 1405
Query: 667 --YKRILVLISH 696
R ++ I+H
Sbjct: 1406 RFNDRTILTIAH 1417
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 84 PRSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGR 242
P IK ++S+ + + +L D + + + G+VG G GKS+L AL R
Sbjct: 1219 PSHGAIKFDHYSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALFR 1273
Score = 26.6 bits (56), Expect = 4.0
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +3
Query: 96 DIKIANFSITFYGSELLQDTLLELNCGRRYG----LVGLNGCGKSSLL-AALGRRE 248
+IK FS + G + TL +++ R G +VG G GKSSLL A LG +
Sbjct: 579 EIKKGTFSWSGPGQNAAEPTLRDIDFVARRGELCCIVGKVGMGKSSLLEACLGNMQ 634
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 31.9 bits (69), Expect = 0.11
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Frame = +1
Query: 550 MRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELK---HYKR-----ILVLISHSQD 705
+R+ALA L V +L LDEPT +LD + L + L ++R L++I+H +
Sbjct: 1194 IRLALAECLGVNCGILALDEPTTNLDEENICSLAKNLSRIVEFRRKQANFQLIVITHDEQ 1253
Query: 706 FL 711
F+
Sbjct: 1254 FI 1255
Score = 25.4 bits (53), Expect = 9.3
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 284 TREMPASDKTALQCVMEVDEERVKLEK-LAEMLAHCEDDESQEQLMDVYDRLDDLSADTA 460
TRE ASD L+ +M EE V + L +H + + +E++ + + L+A+ A
Sbjct: 1000 TRERNASDNLRLRALMRQLEEAVTQKNYLLSQQSHDDRESFRERMQILKSKYGALNAERA 1059
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 29.5 bits (63), Expect = 0.57
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +1
Query: 529 DFSGGWRMRIALARALYVKPHLLLLDEPTNHLDLDTCVWLEEELKHY 669
+ SGG R+A+ AL + + L+DEP+ +LD + + + ++ +
Sbjct: 455 NLSGGELQRVAICLALGMPADVYLIDEPSAYLDSEQRIIASKVIRRF 501
Score = 29.1 bits (62), Expect = 0.76
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 502 QGMQQKATKDFSGGWRMRIALARALYVKPHLLLLDEPTNHLDL 630
Q + + SGG R A+A K + + DEP+++LD+
Sbjct: 210 QNLLNREVGHLSGGELQRFAIAAVATQKADVYMFDEPSSYLDI 252
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 174 GRRYGLVGLNGCGKSSLLAALGRREVP 254
G+ GLVG NG GKS+ L L + P
Sbjct: 103 GQVLGLVGTNGIGKSTALKILSGKMKP 129
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.00
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +3
Query: 117 SITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPFRN 263
SI+F SEL+ TLL+L +G+VG+ + A G R V FRN
Sbjct: 2 SISF--SELVAKTLLDLEVKVVFGIVGIPVIEICEAIQASGIRFVGFRN 48
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 141 LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGR 242
+L + G + VG +GCGKS++L L R
Sbjct: 458 ILNGCSFNIPAGAKVAFVGASGCGKSTILRLLFR 491
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 335 VDEERVKLEKLAEMLAHCEDDESQEQLMDVYDRL-DDLSADTAEA 466
+DE + E+ L DDE +E++ D+ D L D S +T+E+
Sbjct: 197 IDEGEEEEEREEAELEFVSDDEDEEEISDLEDWLGSDQSMETSES 241
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 547 RMRIALARALYVKPHLLL-LDEPTNHLD 627
R R + L KP LLL LDEPT+ LD
Sbjct: 1028 RKRATIGVELAAKPALLLFLDEPTSGLD 1055
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -3
Query: 212 STPIKSD*PISSPTIQLQESILK*LTPIESN*KVS 108
S+P++ P+ PT+QLQ S L L P E KV+
Sbjct: 437 SSPVR---PMLKPTLQLQNSPLSKLVPQEVGNKVN 468
>SPAC9E9.14 |vps24||vacuolar sorting protein
Vps24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 293 MPA-SDKTALQCVMEVDEERVKLEKLAEMLAHCEDDESQEQLMDVYDRLDDLSA 451
+PA S+K A + L L+ +A + +EQL+D+ D+LD L +
Sbjct: 178 IPAPSEKAADAATHREQSLKQALPSLSNGIAKDSTEIDEEQLLDIRDKLDALKS 231
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 450 PTRQRRVLLISCMVLASPRNAAEGNERLLRRLA 548
P+R+ + +IS + L S ++ E +RLL+ LA
Sbjct: 107 PSRKHTLWVISSLYLLSKKSENEVEQRLLKALA 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,124,246
Number of Sequences: 5004
Number of extensions: 63692
Number of successful extensions: 354
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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