Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0392
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.46 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   0.80 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.8  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
 Frame = +2

Query: 563 WHERYMLSRTY----CCWTSQQTISIWTPVCGLKKNL--NTTKEF 679
           W+ RY L+ T      CWT  + I   TP+  L   L  +  KEF
Sbjct: 196 WNTRYCLTPTERLEALCWTQDEDIICSTPIGNLSHALLKDPVKEF 240


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 546 PTSGEVFRCLLLHSLVKPRPCRILAARASAVSALKSSRR 430
           P SG+ F  L    L  PRPC +LA   +    L++  R
Sbjct: 176 PKSGKGFS-LFARFLKNPRPCNVLATSLTEPYTLRNYGR 213


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 634 TCVWLEEELKHYKRILVLISHSQD 705
           T VW+E  LKH+  + V+  HS D
Sbjct: 155 TDVWVEL-LKHFNYMKVIFIHSSD 177


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = +3

Query: 240 RREVPFRNTLTYSI*LEKCLLQIRLHFSASWRLTRRESNSRSSQK 374
           R    ++N + +++ L KC +++     A W +   E   R  Q+
Sbjct: 543 RNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEFYKRRPQR 587


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 598 LLDEPTNHLDLDTCVWLEEELKHYK 672
           L+D    +  + T VW+E+E   YK
Sbjct: 57  LIDVNLKNQIMTTNVWVEQEWNDYK 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,183
Number of Sequences: 438
Number of extensions: 4401
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)