Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0391
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1020 - 33561454-33561568,33561839-33562070,33563286-335633...    29   4.9  
12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768           28   6.5  
02_01_0302 - 2021221-2023305                                           28   6.5  
02_04_0577 - 24011542-24011906,24012285-24012385,24013029-240132...    28   8.6  

>02_05_1020 -
           33561454-33561568,33561839-33562070,33563286-33563374,
           33563856-33563944
          Length = 174

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +3

Query: 336 RGPRYRKSASLDAPHVAPRPNLPKRFSVAEDGFRELDRXXXXXGESAW 479
           R P+YRKS +      +PR   P+R SV+    R   R     G S +
Sbjct: 124 RSPQYRKSPTYGRRSYSPRDRSPRRRSVSPVRGRSYSRSPRGRGGSPY 171


>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
          Length = 1004

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 686 LGRSHPNHHQNAQSCNQKLFRISVWWSF 603
           +GR  P   Q  +    K  ++SVWW F
Sbjct: 34  VGRRGPYQQQQQEEEESKAVKVSVWWDF 61


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 172 ATAPSLHSPDSGRSDPRYANAPRRNPSP 255
           +T PS HSP  G + P + + P  + +P
Sbjct: 501 STTPSYHSPPQGHTTPSHPSPPSSSTAP 528


>02_04_0577 -
           24011542-24011906,24012285-24012385,24013029-24013287,
           24014176-24014264,24015331-24015419
          Length = 300

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 336 RGPRYRKSASLDAPHVAPRPNLPKRFS 416
           R PRYR+S S      +PR   PKR S
Sbjct: 133 RSPRYRRSPSYGRRSYSPRDRSPKRRS 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,756,906
Number of Sequences: 37544
Number of extensions: 201121
Number of successful extensions: 515
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)