Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0391
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_57906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  

>SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 166 PFATAPSLHSPDSGRSDPRYANAPRRNP 249
           P  T PS H P  G+++ +  NA R NP
Sbjct: 621 PVETEPSYHQPPRGQTNGQATNAQRANP 648


>SB_57906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 342 PRYRKSASLDAPH-VAPRPNLPKRFSVAEDGFRELDRXXXXXGESAWMP 485
           P Y    S D  H V+P+P+LP  ++    GFRE          SA +P
Sbjct: 57  PVYTPVPSSDPHHTVSPQPDLPPHYNHRSPGFREGSMSPIVQQYSAHLP 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,766,207
Number of Sequences: 59808
Number of extensions: 222501
Number of successful extensions: 565
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)