Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0387
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   5.6  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   5.6  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.6  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   7.4  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   9.7  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.7  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 483 CFGSQQPTKRQVSLQVITNAVCARTYGNSVIIGSPL 590
           C        R V ++ ITNA C + Y   VI G+ L
Sbjct: 455 CIYDSAKRSRLVYIEKITNAACYQEYSAIVINGTAL 490


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 594 FGANGR-STCSGDSGGLSPSAAAE 662
           FG NG    CS + GGLSP  A E
Sbjct: 328 FGFNGNIDPCSNEYGGLSPFQANE 351


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = +2

Query: 122 SCWTCDRTHEWQNFHLRSSL 181
           SC++  +TH++++F ++SSL
Sbjct: 10  SCFSLQKTHQYRSFWIQSSL 29


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 104 VGGRTTHNPGTVEVSGFLGASKTLSPGDTDL 12
           +G    H  G+V   GF G+    +P DT +
Sbjct: 70  IGSAIGHTVGSVITGGFSGSGSNNAPADTSV 100


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 640 RPPESPLQVLRPLAPKHRGEPMITEFPYVRAQTAL 536
           +PP +P+    P AP+    P++ E P V  + A+
Sbjct: 531 QPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAV 565


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 408  QPSQWKQQLCWYLGLGCR 461
            QP QW Q+LC    L CR
Sbjct: 1785 QPFQWFQELCVKAFLACR 1802


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,889
Number of Sequences: 5004
Number of extensions: 36374
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)