Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0387
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical ...    31   0.55 
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    30   1.3  
U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    28   5.1  
CU457737-9|CAM36330.1|  281|Caenorhabditis elegans Hypothetical ...    28   5.1  
U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast...    27   9.0  
U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast...    27   9.0  

>AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical
           protein Y44A6D.3 protein.
          Length = 229

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 280 SGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQ 402
           +   R+   S H  G   +NN+NN+    NHNH   NNNIQ
Sbjct: 68  AAAARLNAQSSHSSGPARLNNMNNN-NNNNHNH-SKNNNIQ 106


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 501 PTKRQVSLQVITNAVCARTYGNSVIIGSPLCFGANGRSTCSGDSGG 638
           P  + ++L   T A C   +G S+   S        ++ CSGDSGG
Sbjct: 231 PMIQVLTLATETLATCEENWGTSIPFDSFCTAEEEDKNVCSGDSGG 276


>U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical
           protein F20D12.7 protein.
          Length = 158

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -2

Query: 176 NSADGSSAIRECDHKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKTLS 30
           NS DGS    E    SS + V  ++GGR  +  GT+++  + G  K LS
Sbjct: 78  NSTDGSDEEEEITEPSSVLLVMITMGGRMANVVGTMKL--YKGLGKYLS 124


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 138 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 19
           SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 138 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 19
           SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 634 PESPLQVLRPLAPKHRGEPMITEFPYV 554
           P  PLQVL P   K   +P+  +FP V
Sbjct: 623 PSEPLQVLIPFVSKRARKPLRQQFPLV 649


>CU457737-9|CAM36330.1|  281|Caenorhabditis elegans Hypothetical
           protein C52D10.13 protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 253 GELTSLGVPGSPAVSRGHGAGVGQ*GTP 170
           GE   LG PG+P V R   + VG+ G P
Sbjct: 185 GEPGELGAPGAPGVQRTVASPVGEPGEP 212


>U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform b protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +3

Query: 387 QQQHPAHQPSQWKQQLCWYLGLGCRLREDL---RCCFGSQQP 503
           QQQH A Q +Q  QQ   Y G+   +  D+   R  FG   P
Sbjct: 468 QQQHQAQQQAQQHQQQQMYAGINSYMYNDMLMPRVPFGMAPP 509


>U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform a protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +3

Query: 387 QQQHPAHQPSQWKQQLCWYLGLGCRLREDL---RCCFGSQQP 503
           QQQH A Q +Q  QQ   Y G+   +  D+   R  FG   P
Sbjct: 649 QQQHQAQQQAQQHQQQQMYAGINSYMYNDMLMPRVPFGMAPP 690


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,671,996
Number of Sequences: 27780
Number of extensions: 238138
Number of successful extensions: 920
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)