Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0387
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13800.1 68417.m02139 permease-related contains 9 predicted t...    29   2.1  
At1g66440.1 68414.m07548 DC1 domain-containing protein contains ...    29   3.6  
At5g67370.1 68418.m08495 expressed protein similar to unknown pr...    27   8.4  

>At4g13800.1 68417.m02139 permease-related contains 9 predicted
           transmembrane domains; contains Pfam PF05653: Protein of
           unknown function (DUF803); identified as COG0697,
           Permeases of the drug/metabolite transporter (DMT)
           superfamily
          Length = 336

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 137 HKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKT 36
           HK+  MG STS+ G T+H+P    V    G+S++
Sbjct: 294 HKTKDMGNSTSLRGSTSHSPRDTPVFINSGSSRS 327


>At1g66440.1 68414.m07548 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 726

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 643 ERPPESPLQVLRPLAPKHRGEPMITEFPYVRAQTALVMTWRLTWRFVGCWL 491
           E   ++PL+V  PL PKH  + ++      R +        L W F  CW+
Sbjct: 217 EEYEKAPLEVKHPLHPKHSLQLILENSWGCRKKKCYCCDEILLWIFYYCWV 267


>At5g67370.1 68418.m08495 expressed protein similar to unknown
           protein (gb|AAC18972.1)
          Length = 327

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 74  YQDCGWFCRQRWCSPPSCWTCDR 142
           Y++ GW+  Q W  PP     DR
Sbjct: 185 YEESGWYDGQMWVKPPEVLARDR 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,227,899
Number of Sequences: 28952
Number of extensions: 222158
Number of successful extensions: 755
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)