Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0385
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    29   0.71 
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   6.6  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   6.6  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   8.7  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    25   8.7  
SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pom...    25   8.7  

>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 211 SSKMGVSTSVGGRTTHNPGTVEVSGFLGASKTLGPGDTDLDV 86
           +SK+G+  +   R   +   + +  FL  S ++GPG T+LD+
Sbjct: 320 TSKIGLLKAYPNRVLMDKQGIHIGLFLEESPSIGPGMTNLDI 361


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 462 WLHQQHPAHQPSQWKHN 512
           W+  QHP     +WKHN
Sbjct: 413 WMDIQHPQKPLLEWKHN 429


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 463 GFTNNIQRINLASGSTTLLVLGPGLPA 543
           G  N +  I LA  +  LLV+GPG+ A
Sbjct: 491 GGNNRLAGIMLALATVALLVIGPGIIA 517


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 184 VGGRTTHNPGTVEVSGFLGASKTLGPGDTDL 92
           +G    H  G+V   GF G+     P DT +
Sbjct: 70  IGSAIGHTVGSVITGGFSGSGSNNAPADTSV 100


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 244 GSSAIRQCDHKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKTLG 110
           G+  + Q DH       +  +  ++T N GTV+  G    +K +G
Sbjct: 34  GNRNLIQLDHYGFPTASNFELNPKSTDNCGTVDFQGIPWGNKAIG 78


>SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 484 RINLASGSTTLLVLGPG 534
           R  +ASGS T+L +GPG
Sbjct: 174 RTQIASGSATVLGIGPG 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,778
Number of Sequences: 5004
Number of extensions: 34520
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)