Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0385
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0564 - 9477118-9477200,9477617-9477687,9477799-9477944,947... 31 0.96
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 30 1.7
11_06_0156 + 20748472-20748951 29 2.9
10_02_0061 - 4812903-4812940,4813140-4813536 29 3.9
11_01_0479 - 3695245-3696588,3696705-3696965 28 5.1
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 5.1
07_01_0759 + 5838726-5838879,5839654-5839778,5840168-5840264,584... 28 6.8
02_05_0787 - 31742685-31742702,31742703-31742744,31742993-317430... 28 6.8
02_02_0135 + 7096911-7098440 28 6.8
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845... 27 8.9
03_04_0198 - 18381668-18381830,18381903-18382060,18382164-183821... 27 8.9
>03_02_0564 -
9477118-9477200,9477617-9477687,9477799-9477944,
9478051-9478128,9478284-9478388,9478647-9478769,
9479085-9479171,9479272-9479352,9479443-9479512,
9479604-9479662,9479763-9479831,9479912-9479962,
9480063-9480107,9480203-9480276,9480544-9480667,
9480773-9480940
Length = 477
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 573 LPKQHRRSFRSRQPRPKYQQSCASTG*VDALDVV 472
LP HR SFR+ PRP A+ G + A ++
Sbjct: 15 LPHHHRSSFRTSSPRPSRMVCAAAEGFISAAPIL 48
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 252 PQMEVLPFVSAITSPARWG*APALAAEPPTILV 154
P LPF S + + AR G APAL+A P LV
Sbjct: 11 PARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>11_06_0156 + 20748472-20748951
Length = 159
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 579 CWLPKQHRRSFRSRQPRPKYQQSCASTG*VDALDV 475
CWLP+ RRS R R R K+ G +D+
Sbjct: 6 CWLPRACRRSMRHRSCRTKFAWDGERDGMAATVDI 40
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 36 WRWRPWSW---QKSPSNSTTTSRSVSPGPRVLDAPRKP 140
WRWR W W + ++ST S++ G R+L R P
Sbjct: 41 WRWRQWWWLEATRRANSSTAVGGSMAVG-RLLPRSRSP 77
>11_01_0479 - 3695245-3696588,3696705-3696965
Length = 534
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/97 (24%), Positives = 41/97 (42%)
Frame = +1
Query: 163 CGWFCRQRWCSPPSCWTCDRTDEWQNFHLRSSLLTNTRSVTAAHCWRTMRXHARQFTLAL 342
C C++ W SC+ C+RT F ++S L + R + C +T H L
Sbjct: 356 CFMVCKEHW---ESCFHCERTIWKIIFDMKSKKLLSIRYYDESQC-QTWGVHYGDDYLPS 411
Query: 343 GTANIFSGGTRVTTSNVQMHGSYNMDTLHNDVAIINH 453
++ F+ + T S+N T ND+ + N+
Sbjct: 412 MISDYFNSNGKYT--------SHNATTSINDLIVTNY 440
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 248 RWKFCHSSVRSQVQQDGGEHQRWRQNHPQSW 156
R + HS GG HQR R +HP +W
Sbjct: 543 RHRHGHSHGDHHHHYHGGHHQRRRHHHPPAW 573
>07_01_0759 +
5838726-5838879,5839654-5839778,5840168-5840264,
5840948-5841421,5842017-5842354,5843039-5843197,
5843273-5843311
Length = 461
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 268 WSVRNSADGSSAIRQCDHKSSKMGVSTSVGGRTTHNPGTVEVS 140
+ ++ S+ + +HK +G +SV RTTH G EV+
Sbjct: 112 YHLQKECGASNFAKGLEHKGDTLGSVSSVEERTTHAQGRKEVT 154
>02_05_0787 -
31742685-31742702,31742703-31742744,31742993-31743022,
31743337-31744183,31744431-31744560,31744682-31744814
Length = 399
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 388 NVQMHGSYNMDTLHNDVAIINHN--HVGFTNNIQRINLASGSTTLLVLGPG 534
N+QMHGS D + NHN + T + IN A+ +TT +L G
Sbjct: 275 NIQMHGSSLFDQSAAIINDANHNQDYAASTGEREIINGATKTTTTTLLPEG 325
>02_02_0135 + 7096911-7098440
Length = 509
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +1
Query: 247 LRSSLLTNTRSVTAAHCWRTMRXHARQFTLALGTANIFSGGTRVTTSNVQMHGSYN--MD 420
LRS LLT + V++ R R +Q + +N+ T SN QM YN +D
Sbjct: 323 LRSELLTMLQLVSSPFSTRLPRHQFKQISYYHFESNLKPSFDDDTNSNAQMDQKYNQCLD 382
Query: 421 TLHNDVAIIN 450
+ + A N
Sbjct: 383 EIQSTTARFN 392
>09_04_0259 -
16182190-16182360,16183185-16183262,16184431-16184586,
16184913-16185092,16185875-16186027
Length = 245
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 60 QKSPSNSTTTSRSVSPGPRVLDAPRKPLT 146
++ PS T T+ V PGP V D RKPL+
Sbjct: 182 KEKPSIGTVTA--VGPGPLVEDGSRKPLS 208
>03_04_0198 -
18381668-18381830,18381903-18382060,18382164-18382199,
18382344-18382439,18382632-18382709,18382921-18383073,
18383261-18383365
Length = 262
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 154 YQDCGWFCRQRWCSPPSCWTCDR 222
Y++ GW+ Q W PP DR
Sbjct: 128 YEETGWYDGQMWVKPPEVLARDR 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,504,092
Number of Sequences: 37544
Number of extensions: 309219
Number of successful extensions: 1350
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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