Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0385
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    29   2.0  
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF067945-16|AAC17675.1|  341|Caenorhabditis elegans Serpentine r...    28   4.6  
U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 10/128 (7%)
 Frame = +1

Query: 226 DEWQNFHLRSSLLTNTRSVTAAHCWRTMRXHARQFTLALGTANIFSGGTRVTTSNVQMHG 405
           D  Q     ++++ +   VTAAHC   ++   R F       N  +     +     +H 
Sbjct: 59  DNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVYVREPKN--NRERSFSVKEAYIHS 114

Query: 406 SYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSTTLL-------VLGPGLPASE---GP 555
            YN  T  ND+A++  +       I+ + L    + LL       V+G GL   E   G 
Sbjct: 115 GYNNQTADNDIALLRISSDLSKLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGE 174

Query: 556 PMLLREPT 579
           P L+   T
Sbjct: 175 PKLINSQT 182


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 230 SSVRSQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGY 99
           S   SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 230 SSVRSQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGY 99
           S   SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 351 SKRNSQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>AF067945-16|AAC17675.1|  341|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 12 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -3

Query: 311 LMVLQQ*AAVTERVLVSKELRRWKFCHSSVRSQVQQDG 198
           LM+L   A +T + L +  L++++ CHS+V  + Q+ G
Sbjct: 173 LMILNLFALLTNQFLRTWNLKKYEECHSNVSIRFQRGG 210


>U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical
           protein F20D12.7 protein.
          Length = 158

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 256 NSADGSSAIRQCDHKSSKMGVSTSVGGRTTHNPGTVEVSGFLG 128
           NS DGS    +    SS + V  ++GGR  +  GT+++   LG
Sbjct: 78  NSTDGSDEEEEITEPSSVLLVMITMGGRMANVVGTMKLYKGLG 120


>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
           protein R155.2 protein.
          Length = 1308

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 397 MHGSYNMDTLHNDVAIINHNHVGFTNNIQRIN 492
           +H S N  TL N   I+N     F  ++Q+IN
Sbjct: 501 LHDSMNQHTLDNMSQIVNVTDAKFLESVQKIN 532


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,487,139
Number of Sequences: 27780
Number of extensions: 222474
Number of successful extensions: 1003
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)