Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0384
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)              60   1e-09
SB_30340| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  

>SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)
          Length = 1596

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 22/49 (44%), Positives = 33/49 (67%)
 Frame = +2

Query: 107 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDY 253
           LVDP  ++RE C +KP+   +  +   C +RVNS+S T ETC +EL+D+
Sbjct: 372 LVDPMDAIRESCEEKPECSKLKLELSNCEERVNSKSSTTETCAQELLDF 420


>SB_30340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 137 ECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELI 247
           EC +KP    MW +Y+   D++ SR +      +E I
Sbjct: 36  ECCRKPLVYYMWYRYERFEDKMKSRERYENEGNQEKI 72


>SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 158 AQNMWAKYQECNDRVNSRSKTAETCEEELIDYAMFLTNASPRTCLR 295
           A  + +++ + ND+ +  S   + C + L+DY  F++  SP+ C R
Sbjct: 578 ALGLLSRFSQMNDQTSVFSLLTKPCIKCLLDYVSFVSKPSPK-CAR 622


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,886,421
Number of Sequences: 59808
Number of extensions: 197681
Number of successful extensions: 368
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)