SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0384
         (470 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT007070-1|AAP35733.1|   91|Homo sapiens ubiquinol-cytochrome c ...    48   2e-05
BC107703-1|AAI07704.1|   91|Homo sapiens ubiquinol-cytochrome c ...    48   2e-05
BC015177-1|AAH15177.1|   91|Homo sapiens ubiquinol-cytochrome c ...    48   2e-05
BC001934-1|AAH01934.1|   91|Homo sapiens ubiquinol-cytochrome c ...    48   2e-05
BC001426-1|AAH01426.1|   91|Homo sapiens ubiquinol-cytochrome c ...    48   2e-05
AL122001-4|CAI21963.1|   91|Homo sapiens ubiquinol-cytochrome c ...    48   2e-05
BC093060-1|AAH93060.1|   85|Homo sapiens UQCRH protein protein.        47   4e-05
Y00764-1|CAA68733.1|   91|Homo sapiens protein ( Human mRNA for ...    45   2e-04
M36647-1|AAA36317.1|   91|Homo sapiens protein ( Homo sapiens mi...    45   2e-04
DQ926238-1|ABK81457.1|  119|Homo sapiens immunoglobulin heavy ch...    29   6.1  
X13230-1|CAA31617.1|  567|Homo sapiens protein ( Human mRNA for ...    29   8.1  
X12556-1|CAA31069.1|  925|Homo sapiens protein ( Human mRNA for ...    29   8.1  
J03639-1|AAA52172.1|  478|Homo sapiens MCF2 protein.                   29   8.1  
AL161777-3|CAI39715.1| 1070|Homo sapiens MCF.2 cell line derived...    29   8.1  
AL117234-1|CAB55301.1|  985|Homo sapiens hypothetical protein pr...    29   8.1  
AL033403-7|CAI42108.1|  860|Homo sapiens MCF.2 cell line derived...    29   8.1  
AL033403-6|CAA21955.1|  925|Homo sapiens MCF.2 cell line derived...    29   8.1  
AL033403-5|CAI42107.1|  941|Homo sapiens MCF.2 cell line derived...    29   8.1  
AL033403-4|CAI42106.1|  528|Homo sapiens MCF.2 cell line derived...    29   8.1  
AL033403-3|CAI42105.1|  428|Homo sapiens MCF.2 cell line derived...    29   8.1  
AL033403-2|CAI42104.1| 1070|Homo sapiens MCF.2 cell line derived...    29   8.1  
AB209679-1|BAD92916.1|  435|Homo sapiens MCF.2 cell line derived...    29   8.1  
AB085902-1|BAC41201.1|  941|Homo sapiens DBL proto-oncogene spli...    29   8.1  
AB085901-1|BAC41200.1|  860|Homo sapiens DBL proto-oncogene spli...    29   8.1  

>BT007070-1|AAP35733.1|   91|Homo sapiens ubiquinol-cytochrome c
           reductase hinge protein protein.
          Length = 91

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = +2

Query: 107 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDY 253
           LVDP  ++RE+C Q         + + C++RV+SRS T E C EEL D+
Sbjct: 26  LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEEDCTEELFDF 74


>BC107703-1|AAI07704.1|   91|Homo sapiens ubiquinol-cytochrome c
           reductase hinge protein protein.
          Length = 91

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = +2

Query: 107 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDY 253
           LVDP  ++RE+C Q         + + C++RV+SRS T E C EEL D+
Sbjct: 26  LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEEDCTEELFDF 74


>BC015177-1|AAH15177.1|   91|Homo sapiens ubiquinol-cytochrome c
           reductase hinge protein protein.
          Length = 91

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = +2

Query: 107 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDY 253
           LVDP  ++RE+C Q         + + C++RV+SRS T E C EEL D+
Sbjct: 26  LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEEDCTEELFDF 74


>BC001934-1|AAH01934.1|   91|Homo sapiens ubiquinol-cytochrome c
           reductase hinge protein protein.
          Length = 91

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = +2

Query: 107 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDY 253
           LVDP  ++RE+C Q         + + C++RV+SRS T E C EEL D+
Sbjct: 26  LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEEDCTEELFDF 74


>BC001426-1|AAH01426.1|   91|Homo sapiens ubiquinol-cytochrome c
           reductase hinge protein protein.
          Length = 91

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = +2

Query: 107 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDY 253
           LVDP  ++RE+C Q         + + C++RV+SRS T E C EEL D+
Sbjct: 26  LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEEDCTEELFDF 74


>AL122001-4|CAI21963.1|   91|Homo sapiens ubiquinol-cytochrome c
           reductase hinge protein protein.
          Length = 91

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 21/49 (42%), Positives = 30/49 (61%)
 Frame = +2

Query: 107 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDY 253
           LVDP  ++RE+C Q         + + C++RV+SRS T E C EEL D+
Sbjct: 26  LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEEDCTEELFDF 74


>BC093060-1|AAH93060.1|   85|Homo sapiens UQCRH protein protein.
          Length = 85

 Score = 46.8 bits (106), Expect = 4e-05
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +2

Query: 53  MSDKFVPVVXAXXXXXXXL-VDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAET 229
           M D+ +P + A          DP  ++RE+C Q         + + C++RV+SRS T E 
Sbjct: 1   MGDRILPFLAAVWLCQLAFCTDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEED 60

Query: 230 CEEELIDY 253
           C EEL D+
Sbjct: 61  CTEELFDF 68


>Y00764-1|CAA68733.1|   91|Homo sapiens protein ( Human mRNA for
           mitochondrial hinge protein. ).
          Length = 91

 Score = 44.8 bits (101), Expect = 2e-04
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = +2

Query: 107 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDY 253
           LVDP  ++RE+C Q         + + C++R +SRS T E C EEL D+
Sbjct: 26  LVDPLTTVREQCEQLEKCVKARERLELCDERDSSRSHTEEDCTEELFDF 74


>M36647-1|AAA36317.1|   91|Homo sapiens protein ( Homo sapiens
           mitochondrial hinge protein precursor, mRNA, complete
           cds. ).
          Length = 91

 Score = 44.8 bits (101), Expect = 2e-04
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = +2

Query: 107 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDY 253
           LVDP  ++RE+C Q         + + C++R +SRS T E C EEL D+
Sbjct: 26  LVDPLTTVREQCEQLEKCVKARERLELCDERDSSRSHTEEDCTEELFDF 74


>DQ926238-1|ABK81457.1|  119|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 119

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 451 NYLYLQINSNNIGDSHILYINKFTKTTG 368
           N LYLQ+NS   GD+ + Y  K TK +G
Sbjct: 77  NSLYLQMNSLRPGDTALYYCAKDTKESG 104


>X13230-1|CAA31617.1|  567|Homo sapiens protein ( Human mRNA for
           MCF.2 protein 3'-end. ).
          Length = 567

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 DPQQSLREECSQKPDAQNMWAKYQEC 190
           D  Q   + C  KP ++ +W KY EC
Sbjct: 225 DDFQMYAKYCQNKPRSETIWRKYSEC 250


>X12556-1|CAA31069.1|  925|Homo sapiens protein ( Human mRNA for dbl
           proto-oncogene. ).
          Length = 925

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 DPQQSLREECSQKPDAQNMWAKYQEC 190
           D  Q   + C  KP ++ +W KY EC
Sbjct: 583 DDFQMYAKYCQNKPRSETIWRKYSEC 608


>J03639-1|AAA52172.1|  478|Homo sapiens MCF2 protein.
          Length = 478

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 DPQQSLREECSQKPDAQNMWAKYQEC 190
           D  Q   + C  KP ++ +W KY EC
Sbjct: 136 DDFQMYAKYCQNKPRSETIWRKYSEC 161


>AL161777-3|CAI39715.1| 1070|Homo sapiens MCF.2 cell line derived
           transforming sequence protein.
          Length = 1070

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 DPQQSLREECSQKPDAQNMWAKYQEC 190
           D  Q   + C  KP ++ +W KY EC
Sbjct: 728 DDFQMYAKYCQNKPRSETIWRKYSEC 753


>AL117234-1|CAB55301.1|  985|Homo sapiens hypothetical protein
           protein.
          Length = 985

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 DPQQSLREECSQKPDAQNMWAKYQEC 190
           D  Q   + C  KP ++ +W KY EC
Sbjct: 643 DDFQMYAKYCQNKPRSETIWRKYSEC 668


>AL033403-7|CAI42108.1|  860|Homo sapiens MCF.2 cell line derived
           transforming sequence protein.
          Length = 860

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 DPQQSLREECSQKPDAQNMWAKYQEC 190
           D  Q   + C  KP ++ +W KY EC
Sbjct: 583 DDFQMYAKYCQNKPRSETIWRKYSEC 608


>AL033403-6|CAA21955.1|  925|Homo sapiens MCF.2 cell line derived
           transforming sequence protein.
          Length = 925

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 DPQQSLREECSQKPDAQNMWAKYQEC 190
           D  Q   + C  KP ++ +W KY EC
Sbjct: 583 DDFQMYAKYCQNKPRSETIWRKYSEC 608


>AL033403-5|CAI42107.1|  941|Homo sapiens MCF.2 cell line derived
           transforming sequence protein.
          Length = 941

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 DPQQSLREECSQKPDAQNMWAKYQEC 190
           D  Q   + C  KP ++ +W KY EC
Sbjct: 599 DDFQMYAKYCQNKPRSETIWRKYSEC 624


>AL033403-4|CAI42106.1|  528|Homo sapiens MCF.2 cell line derived
           transforming sequence protein.
          Length = 528

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 DPQQSLREECSQKPDAQNMWAKYQEC 190
           D  Q   + C  KP ++ +W KY EC
Sbjct: 186 DDFQMYAKYCQNKPRSETIWRKYSEC 211


>AL033403-3|CAI42105.1|  428|Homo sapiens MCF.2 cell line derived
           transforming sequence protein.
          Length = 428

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 DPQQSLREECSQKPDAQNMWAKYQEC 190
           D  Q   + C  KP ++ +W KY EC
Sbjct: 86  DDFQMYAKYCQNKPRSETIWRKYSEC 111


>AL033403-2|CAI42104.1| 1070|Homo sapiens MCF.2 cell line derived
           transforming sequence protein.
          Length = 1070

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 DPQQSLREECSQKPDAQNMWAKYQEC 190
           D  Q   + C  KP ++ +W KY EC
Sbjct: 728 DDFQMYAKYCQNKPRSETIWRKYSEC 753


>AB209679-1|BAD92916.1|  435|Homo sapiens MCF.2 cell line derived
           transforming sequence variant protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 DPQQSLREECSQKPDAQNMWAKYQEC 190
           D  Q   + C  KP ++ +W KY EC
Sbjct: 93  DDFQMYAKYCQNKPRSETIWRKYSEC 118


>AB085902-1|BAC41201.1|  941|Homo sapiens DBL proto-oncogene
           splicing variant 2 protein.
          Length = 941

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 DPQQSLREECSQKPDAQNMWAKYQEC 190
           D  Q   + C  KP ++ +W KY EC
Sbjct: 599 DDFQMYAKYCQNKPRSETIWRKYSEC 624


>AB085901-1|BAC41200.1|  860|Homo sapiens DBL proto-oncogene
           splicing variant 1 protein.
          Length = 860

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 DPQQSLREECSQKPDAQNMWAKYQEC 190
           D  Q   + C  KP ++ +W KY EC
Sbjct: 583 DDFQMYAKYCQNKPRSETIWRKYSEC 608


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,391,226
Number of Sequences: 237096
Number of extensions: 947484
Number of successful extensions: 10769
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 10755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10769
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -