Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0384
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82059-1|CAB04873.1|   75|Caenorhabditis elegans Hypothetical pr...    46   1e-05
AC006730-3|ABO16463.1|  365|Caenorhabditis elegans Hypothetical ...    28   2.9  
Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U00049-8|AAM22031.1|  136|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U00049-7|AAC47054.1|  582|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AC024776-20|AAK68473.2|  460|Caenorhabditis elegans Nuclear horm...    27   6.8  
U41556-2|ABS19475.1|  369|Caenorhabditis elegans Cysteine protea...    27   9.0  
AL031627-23|CAA20946.2|  174|Caenorhabditis elegans Hypothetical...    27   9.0  

>Z82059-1|CAB04873.1|   75|Caenorhabditis elegans Hypothetical
           protein T27E9.2 protein.
          Length = 75

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 23/56 (41%), Positives = 29/56 (51%)
 Frame = +2

Query: 110 VDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDYAMFLTNAS 277
           VD     RE C+         +   ECNDRVNSRS T ETC +E+ DY   L + +
Sbjct: 13  VDQLTQYRERCADH--VTEFKSILDECNDRVNSRSNTEETCHQEMADYVHHLDHCA 66


>AC006730-3|ABO16463.1|  365|Caenorhabditis elegans Hypothetical
           protein Y27F2A.5 protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 457 TGNYL-YLQINSNNIGDSHILYINKFTKTTG 368
           TG YL YLQI+ N+I  +HILY     ++ G
Sbjct: 34  TGLYLTYLQIDQNSIQINHILYRLSVIRSNG 64


>Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical
           protein F21C3.2 protein.
          Length = 813

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 116 PQQSLREECSQKPDAQNMWAKYQECN 193
           P  ++ EECS +     MW++  ECN
Sbjct: 628 PNYNINEECSDRHTNCAMWSRSGECN 653


>U00049-8|AAM22031.1|  136|Caenorhabditis elegans Hypothetical
           protein C18F10.7b protein.
          Length = 136

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 170 WAKYQECNDRVNSRSKTAETCEEELID 250
           WA Y +C D +N   K   T E + ID
Sbjct: 15  WAVYVDCKDELNELLKNKSTLEIDKID 41


>U00049-7|AAC47054.1|  582|Caenorhabditis elegans Hypothetical
           protein C18F10.7a protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 170 WAKYQECNDRVNSRSKTAETCEEELID 250
           WA Y +C D +N   K   T E + ID
Sbjct: 15  WAVYVDCKDELNELLKNKSTLEIDKID 41


>AC024776-20|AAK68473.2|  460|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 274 protein.
          Length = 460

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 188 CNDRVNSRSKTAETCEEELIDYAMFLTNASPRTCLRG 298
           C DRVN +   A  C   ++ +   +TN     CL+G
Sbjct: 39  CGDRVNGKRYGAPACLGCIVFFRRAVTNEVTYKCLKG 75


>U41556-2|ABS19475.1|  369|Caenorhabditis elegans Cysteine protease
           related protein6, isoform c protein.
          Length = 369

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 173 AKYQECNDRVNSRSKTAETCEEELIDY 253
           A Y  CND + S  + AE   ++LIDY
Sbjct: 13  AAYCACNDNLESVLEAAELDGDDLIDY 39


>AL031627-23|CAA20946.2|  174|Caenorhabditis elegans Hypothetical
           protein Y102A5C.9 protein.
          Length = 174

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 271 CVTKDLFKRLK**IENLNPNFKIIE 345
           C+ + + K+LK  I+N +P FKI++
Sbjct: 15  CILRGVCKKLKNFIDNKDPGFKIVK 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,987,242
Number of Sequences: 27780
Number of extensions: 154077
Number of successful extensions: 374
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)