Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0384
         (470 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15120.1 68414.m01805 ubiquinol-cytochrome C reductase comple...    30   0.69 
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    27   6.4  
At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    27   6.4  

>At1g15120.1 68414.m01805 ubiquinol-cytochrome C reductase complex
           7.8 kDa protein, putative / mitochondrial hinge protein,
           putative similar to SP|P48504 Ubiquinol-cytochrome C
           reductase complex 7.8 kDa protein (EC 1.10.2.2)
           (Mitochondrial hinge protein) (CR7) {Solanum tuberosum};
           contains Pfam profile PF02320: Ubiquinol-cytochrome C
           reductase hinge protein
          Length = 69

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 107 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDY 253
           +VDP++ L E C  KP       +YQ C  R+       + C  +  DY
Sbjct: 6   VVDPKKYLEESC--KPKCVKPLLEYQACVKRIQGDDSGHKHCTGQYFDY 52


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 138 SVPKSLMPKTCGLNIKSAMIV*TPDLKLQKPVKKNSLTM 254
           SVPK L+     ++IKS+++V    +KL K   +NS T+
Sbjct: 438 SVPKCLLSSLEFVDIKSSILVYVARMKLVKYFLENSTTL 476


>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
            profile: PF00225 Kinesin motor domain; contains
            non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 107  LVDPQQSLREECSQ-KPDAQNMWAKYQECNDRVNSRSKTAETCEEEL 244
            L D   +L+EE  + K +A+ M A+Y E      SR   A+  EEE+
Sbjct: 2205 LQDEVLNLKEEFGKMKSEAKEMEARYIEAQQIAESRKTYADEREEEV 2251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,306,678
Number of Sequences: 28952
Number of extensions: 138636
Number of successful extensions: 325
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)