Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0383
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270...    32   0.39 
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173...    29   2.7  
12_01_0197 + 1456296-1456668,1456930-1458746                           29   4.8  
11_01_0191 + 1508509-1508749,1508852-1509204,1509860-1510002,151...    29   4.8  
12_01_1055 - 10861665-10861829,10862827-10863171,10864374-108646...    28   8.4  
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260...    28   8.4  

>06_03_1067 - 27326167-27326295,27326572-27326656,27326993-27327033,
            27327274-27327333,27327843-27327962,27328842-27329114,
            27329186-27329257,27329798-27329860,27329957-27330139,
            27330544-27330660,27330734-27332683,27332770-27332907,
            27333003-27333284,27334650-27335522
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 45   MCSSG-NPVTLKCPSNLFFSPITQTCEWSKNVECGTRVVPGE 167
            M ++G N  +L+ PS++  SP  +T   SK+V CG+ V+ G+
Sbjct: 889  MTANGMNSESLQSPSSMQDSPEDKTISVSKSVSCGSEVIKGD 930


>03_01_0219 +
           1731267-1731728,1732148-1732235,1732330-1732417,
           1732528-1732573,1732687-1732785,1734363-1734431,
           1735706-1736036,1736123-1736256,1736400-1737251
          Length = 722

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 350 RCDFPANVSCEGRVAPVFLPPLNKHLEARQ 439
           +C+  ANVSC+G  +    PPL +H  +R+
Sbjct: 568 KCENGANVSCDGVGSTGQTPPLQQHSHSRE 597


>12_01_0197 + 1456296-1456668,1456930-1458746
          Length = 729

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +2

Query: 245 QTC-THNVCSHYHMCVSGKTLSLACPSNL-FYDPQK--ERCDFPANVSCEGRVAPVFL 406
           QTC TH +C  Y +C    T   +CP      +P    + C     ++C+G+    FL
Sbjct: 205 QTCMTHGLCGPYGICHYSPTPRCSCPPGYKMRNPGNWTQGCKPIVEIACDGKQNVTFL 262


>11_01_0191 +
           1508509-1508749,1508852-1509204,1509860-1510002,
           1510195-1510256,1510406-1510479,1510812-1510864,
           1511072-1513550
          Length = 1134

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +2

Query: 245 QTC-THNVCSHYHMCVSGKTLSLACPSNL-FYDPQK--ERCDFPANVSCEGRVAPVFL 406
           QTC TH +C  Y +C    T   +CP      +P    + C     ++C+G+    FL
Sbjct: 610 QTCMTHGLCGPYGICHYSPTPRCSCPPGYKMRNPGNWTQGCKPIVEIACDGKQNVTFL 667


>12_01_1055 -
           10861665-10861829,10862827-10863171,10864374-10864682,
           10864813-10864968,10865669-10866117,10869275-10869359,
           10869944-10870300,10870672-10871076
          Length = 756

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 255 PIMCVATITCASAVKHYHSLVRLI 326
           P+ C+A ++  SAV+H+H   R++
Sbjct: 3   PLCCIAPVSLDSAVEHHHQPPRIL 26


>11_05_0081 -
           18924353-18924462,18925068-18925187,18925569-18926086,
           18927392-18927471,18927680-18927782,18928084-18928295,
           18928392-18929210,18929331-18929444,18929935-18929983,
           18930115-18930271,18930354-18930807,18930938-18931147
          Length = 981

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 51  SSGNPVTLKCPSNLFFSPITQ-TCEWSKNVECGTRVVPGEENVN 179
           + G   TLK    L   P+ + T  W +N     RVVP ++N+N
Sbjct: 426 AKGGAETLKFNMALILLPVCRNTVTWIRNRAAVARVVPFDDNLN 469


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,170,013
Number of Sequences: 37544
Number of extensions: 347121
Number of successful extensions: 767
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)