Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0383
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g26250.1 68416.m03275 DC1 domain-containing protein contains ... 30 1.3
At5g11070.1 68418.m01293 expressed protein 29 3.0
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ... 29 3.0
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot... 29 3.0
At1g13540.1 68414.m01587 expressed protein 28 5.3
At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein (H... 28 7.0
At3g26240.1 68416.m03274 DC1 domain-containing protein contains ... 28 7.0
At4g39450.1 68417.m05582 expressed protein 27 9.2
At1g70380.1 68414.m08096 F-box family protein contains Pfam PF00... 27 9.2
At1g45243.1 68414.m05188 DC1 domain-containing protein contains ... 27 9.2
>At3g26250.1 68416.m03275 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 490
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +2
Query: 290 SGKTLSLACPS----NLFYDPQKERCDFPANVSCEGRVAPVFLPPLNKH 424
S + + ACPS FY+ + CDF +V C R++ L P + H
Sbjct: 249 SDRDICSACPSLCIAGFFYECSERNCDFRLHVQC-ARISEPLLHPSHMH 296
>At5g11070.1 68418.m01293 expressed protein
Length = 152
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 248 TCTHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVSCE 382
TC +N C+ Y+ CV S + P + YDP +F NV +
Sbjct: 79 TCRNNNCA-YNNCVHHHHHSQSYPGDFSYDPLSYALNFEDNVRAD 122
>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 1610
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +2
Query: 263 VCSHYHMCVSGKTLSLACPSNL----FYDPQKERCDFPANVSC 379
V +Y++ V + ACPS L FY ++ CDF +V C
Sbjct: 481 VTEYYNVMVHRSQVCSACPSLLRACFFYKCDEQDCDFQLHVQC 523
>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
similar to DNA helicase HEL308 [Homo sapiens]
GI:19110782; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00476: DNA polymerase family A
Length = 1548
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/64 (25%), Positives = 26/64 (40%)
Frame = +3
Query: 198 DPKQALSLCAQEGSNGKLVPIMCVATITCASAVKHYHSLVRLIFSMILKRNDAIFLLMSA 377
DP + LC + G V I C + C S +H L++ + + N + SA
Sbjct: 214 DPDHIVELCNEVVQEGNSVLIFCSSRKGCESTARHISKLIKNVPVNVDGENSEFMDIRSA 273
Query: 378 AKAV 389
A+
Sbjct: 274 IDAL 277
>At1g13540.1 68414.m01587 expressed protein
Length = 381
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 231 EGSNGKLVPIMCVATITCASAVKHYHSLVRLIFSMILKRNDAIFLL 368
+G N + + + + T S KHYH V LI S +LKR D +L
Sbjct: 322 KGDNERSMTVKRLEKSTDGSLWKHYHCYV-LIESFVLKRMDESLVL 366
>At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein
(HSP22.0-ER) identical to endomembrane-localized small
heat shock protein GI:511795 from [Arabidopsis thaliana]
Length = 195
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 70 LLNVLRTYSLAQ-SPKLVNGPRMSNVALESFQVRKTS 177
L N + T +L + SP+ V GPR+ N+A E Q K S
Sbjct: 152 LENGVLTINLTKLSPEKVKGPRVVNIAAEEDQTAKIS 188
>At3g26240.1 68416.m03274 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 922
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +2
Query: 314 CPSNLFYDPQKERCDFPANVSCEGRVAPVFLPPLNKHL 427
C S FY K CDF +V C P+ P HL
Sbjct: 695 CISGFFYKCSKIDCDFRLHVQCATISEPLLHPSHMHHL 732
>At4g39450.1 68417.m05582 expressed protein
Length = 1553
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -2
Query: 226 AHKDNACFGSQLQGPVLTFSSPGTTLVPHSTFLDHSQVWVIGLKNKFEGHLRVTGFPD 53
A+ D + Q Q P ++ S PG L+ L+ + + IG+ K G+ +TG D
Sbjct: 219 AYPDISSVPKQKQNPSISGSQPGLPLMLVLHHLEQASLPEIGVGRKTSGYWLLTGDGD 276
>At1g70380.1 68414.m08096 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 377
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 227 SRRFERQTCTHNVCSHYHMCVSGK 298
SR+F R+TC H+V + +SGK
Sbjct: 66 SRKFTRETCFHSVYQEPPLLLSGK 89
>At1g45243.1 68414.m05188 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 263
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 305 SLACPSNLFYDPQKERCDFPANVSC 379
S C FY+ KE CDF +V C
Sbjct: 59 SWLCKVGFFYECGKEGCDFQLHVQC 83
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,404,909
Number of Sequences: 28952
Number of extensions: 299856
Number of successful extensions: 755
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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